Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm32200-201ENSMUST00000192778 2385 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Gm44888-201ENSMUST00000209119 2541 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Megf10-201ENSMUST00000075770 7514 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Txk-203ENSMUST00000197313 2190 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 6030469F06Rik-202ENSMUST00000218473 1537 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Blk-201ENSMUST00000014597 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Nav2-204ENSMUST00000183659 7765 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Gm15983-201ENSMUST00000140000 4814 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Pde2a-202ENSMUST00000166652 3977 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Armc2-201ENSMUST00000095729 4855 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Traf1P39428 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Traf1P39428 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Traf1P39428 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Gm13777-201ENSMUST00000118208 345 ntBASIC11.9□□□□□ -0.5
Traf1P39428 Gm14571-201ENSMUST00000118292 570 ntBASIC11.9□□□□□ -0.5
Traf1P39428 Gm15032-201ENSMUST00000118547 411 ntBASIC11.9□□□□□ -0.5
Traf1P39428 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Adar-205ENSMUST00000121094 2321 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 4930538E20Rik-201ENSMUST00000131383 546 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Znrf1-202ENSMUST00000166859 3650 ntTSL 5 BASIC11.9□□□□□ -0.5
Traf1P39428 Gm24368-201ENSMUST00000175388 106 ntBASIC11.9□□□□□ -0.5
Traf1P39428 Gm7251-201ENSMUST00000182661 1009 ntBASIC11.9□□□□□ -0.5
Traf1P39428 Gm33707-201ENSMUST00000195135 569 ntBASIC11.9□□□□□ -0.5
Traf1P39428 Acsm5-204ENSMUST00000207387 1130 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Gm33570-201ENSMUST00000207608 1254 ntTSL 5 BASIC11.9□□□□□ -0.5
Traf1P39428 CU025215.1-201ENSMUST00000222986 603 ntBASIC11.9□□□□□ -0.5
Traf1P39428 AC137950.2-201ENSMUST00000227127 1089 ntBASIC11.9□□□□□ -0.5
Traf1P39428 AC107711.3-201ENSMUST00000228939 1035 ntBASIC11.9□□□□□ -0.5
Traf1P39428 Olfr642-201ENSMUST00000052660 945 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Traf1P39428 Gm4883-201ENSMUST00000085702 528 ntBASIC11.9□□□□□ -0.5
Traf1P39428 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Traf1P39428 Piwil1-202ENSMUST00000195959 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Ppp6r2-201ENSMUST00000088788 2887 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Traf1P39428 Gckr-202ENSMUST00000201166 2272 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Traf1P39428 Sp100-201ENSMUST00000054279 1978 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Traf1P39428 Qrfpr-201ENSMUST00000091227 1839 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Traf1P39428 Arvcf-203ENSMUST00000115612 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Traf1P39428 Gm26953-209ENSMUST00000213051 2087 ntTSL 5 BASIC11.9□□□□□ -0.51
Traf1P39428 Hdac9-206ENSMUST00000209990 3072 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.51
Traf1P39428 Gm14023-201ENSMUST00000144178 1781 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Traf1P39428 Actn2-201ENSMUST00000064204 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Ank3-242ENSMUST00000183261 4999 ntTSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 Zer1-201ENSMUST00000044751 4100 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 Carhsp1-201ENSMUST00000008537 2849 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Tmem67-202ENSMUST00000108293 3945 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 Acsl1-201ENSMUST00000034046 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Plut-202ENSMUST00000174285 1444 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Rack1-201ENSMUST00000020640 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Phf21a-202ENSMUST00000068702 6023 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 Gm24981-201ENSMUST00000104459 132 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Zfand1-202ENSMUST00000108377 936 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Gm13303-201ENSMUST00000117125 1284 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Gm6276-201ENSMUST00000120159 579 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Gm15815-201ENSMUST00000120569 255 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Gm12853-201ENSMUST00000134971 442 ntTSL 3 BASIC11.89□□□□□ -0.51
Traf1P39428 Ap1g1-206ENSMUST00000179104 1096 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Gm27241-201ENSMUST00000183517 622 ntTSL 3 BASIC11.89□□□□□ -0.51
Traf1P39428 Gm27200-201ENSMUST00000184626 657 ntTSL 3 BASIC11.89□□□□□ -0.51
Traf1P39428 Gm36307-201ENSMUST00000195831 953 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Gm42133-201ENSMUST00000196076 637 ntTSL 3 BASIC11.89□□□□□ -0.51
Traf1P39428 Gm44017-201ENSMUST00000203231 740 ntTSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 AC122840.4-201ENSMUST00000221310 1285 ntTSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 AC154461.1-201ENSMUST00000224207 1005 ntBASIC11.89□□□□□ -0.51
Traf1P39428 CT030135.2-201ENSMUST00000225255 893 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Supt4a-201ENSMUST00000093955 706 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Gp1ba-202ENSMUST00000108551 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Tbpl1-202ENSMUST00000127698 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Tom1l2-203ENSMUST00000093048 4864 ntTSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 Gm6714-201ENSMUST00000218677 2330 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Gm26527-201ENSMUST00000180416 1948 ntTSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Adcy7-204ENSMUST00000171456 5951 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Scn9a-201ENSMUST00000100063 9813 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Traf1P39428 Scn9a-202ENSMUST00000100064 9840 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Gm7823-201ENSMUST00000120761 1623 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Ppp4r1l-ps-202ENSMUST00000132669 2767 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Rint1-203ENSMUST00000115113 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Gm15604-201ENSMUST00000118350 1456 ntBASIC11.89□□□□□ -0.51
Traf1P39428 Ap1m2-201ENSMUST00000003397 1706 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Traf1P39428 Dcstamp-201ENSMUST00000022913 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Cdh1-203ENSMUST00000167688 3203 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Traf1P39428 Hmgcll1-201ENSMUST00000008052 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 9530059O14Rik-201ENSMUST00000181107 3978 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Dchs1-201ENSMUST00000078482 10754 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Traf1P39428 Cenpo-202ENSMUST00000111169 1550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Adgrl3-217ENSMUST00000121707 6690 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Traf1P39428 Rnf20-201ENSMUST00000029989 4154 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Gtf2i-219ENSMUST00000174155 4141 ntAPPRIS P4 TSL 2 BASIC11.88□□□□□ -0.51
Traf1P39428 Gm43817-201ENSMUST00000196459 2262 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Dhdh-201ENSMUST00000011526 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms