Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Gm13623-201ENSMUST00000118359 625 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Gm15539-201ENSMUST00000118452 566 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Gm13631-201ENSMUST00000140978 654 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Snhg3-202ENSMUST00000141090 581 ntTSL 2 BASIC15.53■□□□□ 0.08
Cux1P53564 Coq8a-208ENSMUST00000160879 561 ntTSL 5 BASIC15.53■□□□□ 0.08
Cux1P53564 Gm8079-201ENSMUST00000182695 975 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Gm27500-201ENSMUST00000184331 336 ntBASIC15.53■□□□□ 0.08
Cux1P53564 CT009721.1-201ENSMUST00000213590 770 ntTSL 5 BASIC15.53■□□□□ 0.08
Cux1P53564 Rpl19-ps2-201ENSMUST00000219540 590 ntBASIC15.53■□□□□ 0.08
Cux1P53564 AC164315.1-202ENSMUST00000226723 657 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Gm9946-201ENSMUST00000008011 1025 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
Cux1P53564 Fgf9-203ENSMUST00000165526 3593 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Cux1P53564 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Fam187b-201ENSMUST00000058093 1485 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Adat1-202ENSMUST00000120457 1677 ntTSL 5 BASIC15.53■□□□□ 0.08
Cux1P53564 Prdx1-204ENSMUST00000135573 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 AU019990-202ENSMUST00000143964 1614 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 AC117245.3-201ENSMUST00000217495 2176 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Gm24556-201ENSMUST00000104547 130 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Tpt1-ps5-201ENSMUST00000112150 516 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
Cux1P53564 Gm15247-201ENSMUST00000124513 403 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Gm15499-201ENSMUST00000141390 422 ntTSL 5 BASIC15.53■□□□□ 0.08
Cux1P53564 Igkv4-62-201ENSMUST00000177795 288 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Cux1P53564 Gm7776-201ENSMUST00000191211 720 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Gm29372-201ENSMUST00000191416 364 ntBASIC15.53■□□□□ 0.08
Cux1P53564 1700012J15Rik-201ENSMUST00000203458 471 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Gm45126-201ENSMUST00000206702 960 ntBASIC15.53■□□□□ 0.08
Cux1P53564 6430531B16Rik-205ENSMUST00000210254 952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Gm18745-201ENSMUST00000216018 548 ntBASIC15.53■□□□□ 0.08
Cux1P53564 AC155929.2-201ENSMUST00000218541 307 ntBASIC15.53■□□□□ 0.08
Cux1P53564 AC123735.1-201ENSMUST00000227358 605 ntBASIC15.53■□□□□ 0.08
Cux1P53564 Xab2-201ENSMUST00000019614 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cux1P53564 Ube2l3-201ENSMUST00000090192 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Gap43-201ENSMUST00000102817 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Slc35a4-206ENSMUST00000186538 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cux1P53564 Tmem35b-202ENSMUST00000106097 1762 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
Cux1P53564 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cux1P53564 Smok3c-202ENSMUST00000178402 1515 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Cux1P53564 Igkv4-55-201ENSMUST00000103359 379 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Cux1P53564 Gm14617-201ENSMUST00000128053 798 ntTSL 5 BASIC15.52■□□□□ 0.07
Cux1P53564 4930479D17Rik-201ENSMUST00000146754 740 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Cux1P53564 Gm38135-201ENSMUST00000195068 502 ntBASIC15.52■□□□□ 0.07
Cux1P53564 Gm15860-203ENSMUST00000197262 360 ntTSL 3 BASIC15.52■□□□□ 0.07
Cux1P53564 Gm2566-201ENSMUST00000201267 431 ntBASIC15.52■□□□□ 0.07
Cux1P53564 Zkscan7-205ENSMUST00000216462 990 ntBASIC15.52■□□□□ 0.07
Cux1P53564 AC140244.1-201ENSMUST00000228454 229 ntBASIC15.52■□□□□ 0.07
Cux1P53564 Polr2k-201ENSMUST00000057177 601 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Cux1P53564 Psme1-201ENSMUST00000089619 711 ntTSL 5 BASIC15.52■□□□□ 0.07
Cux1P53564 Npm1-202ENSMUST00000093201 1192 ntTSL 5 BASIC15.52■□□□□ 0.07
Cux1P53564 Gm14504-201ENSMUST00000119391 1497 ntBASIC15.52■□□□□ 0.07
Cux1P53564 Gm26527-201ENSMUST00000180416 1948 ntTSL 5 BASIC15.52■□□□□ 0.07
Cux1P53564 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cux1P53564 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Cux1P53564 4930478P22Rik-203ENSMUST00000202026 2060 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Tes-201ENSMUST00000076654 2685 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Sppl2c-202ENSMUST00000107000 2225 ntAPPRIS P4 BASIC15.51■□□□□ 0.07
Cux1P53564 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Cux1P53564 4933405D12Rik-201ENSMUST00000180557 1383 ntTSL 2 BASIC15.51■□□□□ 0.07
Cux1P53564 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Cep63-211ENSMUST00000216281 1791 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Serpina5-201ENSMUST00000021495 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 AC238811.2-201ENSMUST00000224554 1509 ntBASIC15.51■□□□□ 0.07
Cux1P53564 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Sult6b2-201ENSMUST00000111768 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Ssr3-202ENSMUST00000119896 1469 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Gimap4-203ENSMUST00000118802 771 ntTSL 3 BASIC15.51■□□□□ 0.07
Cux1P53564 Gm11888-201ENSMUST00000120471 810 ntBASIC15.51■□□□□ 0.07
Cux1P53564 Gm12257-201ENSMUST00000148244 585 ntTSL 3 BASIC15.51■□□□□ 0.07
Cux1P53564 Gm25687-201ENSMUST00000175442 241 ntBASIC15.51■□□□□ 0.07
Cux1P53564 Gm21917-203ENSMUST00000180309 561 ntTSL 3 BASIC15.51■□□□□ 0.07
Cux1P53564 Gm34358-201ENSMUST00000204585 665 ntTSL 3 BASIC15.51■□□□□ 0.07
Cux1P53564 Xrcc5-201ENSMUST00000027379 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cux1P53564 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cux1P53564 Ces3b-202ENSMUST00000093221 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cux1P53564 Gm29685-201ENSMUST00000219670 2365 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cux1P53564 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms