Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Wdr24-201ENSMUST00000026833 3099 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Slc43a2-211ENSMUST00000169547 7145 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 4930480K15Rik-201ENSMUST00000162121 2199 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm37451-201ENSMUST00000194718 2167 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 D030018L15Rik-202ENSMUST00000139808 1859 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 N4bp2-204ENSMUST00000201489 9055 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC8.37□□□□□ -1.07
Hmgb3O54879 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm37988-201ENSMUST00000155020 825 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm17709-201ENSMUST00000174536 1096 ntBASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
Hmgb3O54879 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Ighv5-11-201ENSMUST00000193354 371 ntBASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm3289-201ENSMUST00000200819 756 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Plcd4-201ENSMUST00000027362 2977 ntAPPRIS P4 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Hmgb4-201ENSMUST00000053830 746 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm5099-201ENSMUST00000194892 1848 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Ctso-201ENSMUST00000029649 3468 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Pantr1-208ENSMUST00000181660 2085 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Nfam1-202ENSMUST00000100377 2881 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Cep63-206ENSMUST00000162655 4180 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Papss1-206ENSMUST00000200527 2811 ntTSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gal3st2-201ENSMUST00000094663 2844 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Atg13-201ENSMUST00000028678 3604 ntTSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Amotl1-206ENSMUST00000223132 3046 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Zmym5-203ENSMUST00000173954 5357 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Zc3h12c-201ENSMUST00000165519 6133 ntAPPRIS P2 TSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Ankk1-201ENSMUST00000034792 2714 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
Hmgb3O54879 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm28653-201ENSMUST00000185494 5276 ntBASIC8.37□□□□□ -1.07
Hmgb3O54879 Gm26772-201ENSMUST00000180466 3429 ntTSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Eif2ak4-202ENSMUST00000102527 4906 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Rorb-202ENSMUST00000112828 2854 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Slc17a2-202ENSMUST00000099697 1893 ntAPPRIS ALT2 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Nbr1-206ENSMUST00000107213 4339 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Amt-201ENSMUST00000035230 2082 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Sec31b-202ENSMUST00000111985 3548 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Usp10-202ENSMUST00000108988 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Pcdhb12-201ENSMUST00000055495 3034 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Hdac7-203ENSMUST00000116408 4226 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm37484-201ENSMUST00000195378 2523 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Frrs1-202ENSMUST00000195905 6823 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Il7-204ENSMUST00000194184 1785 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Ank3-202ENSMUST00000054167 5769 ntAPPRIS ALT2 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Cobl-210ENSMUST00000174874 5451 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm23200-201ENSMUST00000104379 132 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm14326-203ENSMUST00000108932 888 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm11952-201ENSMUST00000121172 821 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gzmn-201ENSMUST00000015587 956 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Tmem229b-ps-201ENSMUST00000168554 506 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm2260-201ENSMUST00000184965 657 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm43097-201ENSMUST00000196867 151 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Acsl6-203ENSMUST00000072178 2432 ntAPPRIS P5 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Rbm19-201ENSMUST00000031590 4010 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Kir3dl2-201ENSMUST00000072125 1734 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm28581-201ENSMUST00000186086 2177 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Oscp1-203ENSMUST00000143712 1473 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Drc3-204ENSMUST00000108723 1917 ntAPPRIS P2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Ctnnd1-208ENSMUST00000111677 5789 ntTSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Cd1d1-201ENSMUST00000029717 1946 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Bcas3-206ENSMUST00000108062 3724 ntAPPRIS ALT2 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Pdk4-201ENSMUST00000019721 3484 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Vmn1r193-203ENSMUST00000227562 6840 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Cdkl1-201ENSMUST00000021377 1689 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Dclre1b-201ENSMUST00000029435 4345 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Tmem106a-201ENSMUST00000039581 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm8122-201ENSMUST00000165988 1404 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
Hmgb3O54879 Gm44056-201ENSMUST00000204623 1427 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Gcm1-201ENSMUST00000024104 2068 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Hmgb3O54879 CT009601.1-201ENSMUST00000225567 2705 ntBASIC8.36□□□□□ -1.07
Hmgb3O54879 Oprm1-213ENSMUST00000105604 1616 ntAPPRIS ALT1 TSL 5 BASIC8.36□□□□□ -1.07
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms