Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Prkd3-204ENSMUST00000119284 4743 ntAPPRIS ALT1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Tmbim7-201ENSMUST00000014673 1552 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Fam216b-202ENSMUST00000118785 1447 ntTSL 5 BASIC9.77□□□□□ -0.85
Cdx2P43241 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Krtap29-1-201ENSMUST00000105051 1029 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
Cdx2P43241 Gm14834-201ENSMUST00000119416 795 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Gm12240-201ENSMUST00000120178 229 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 0610037L13Rik-206ENSMUST00000120473 835 ntTSL 2 BASIC9.77□□□□□ -0.85
Cdx2P43241 Gm4996-201ENSMUST00000122042 784 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 4930589P08Rik-201ENSMUST00000129097 1084 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Gm15208-201ENSMUST00000134448 493 ntTSL 3 BASIC9.77□□□□□ -0.85
Cdx2P43241 H2-Pb-201ENSMUST00000172731 531 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Gm10045-201ENSMUST00000178657 483 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Gm26913-201ENSMUST00000182391 732 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Gm27383-201ENSMUST00000184418 361 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Gm37486-201ENSMUST00000195663 405 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Gm9771-201ENSMUST00000198267 1137 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC9.77□□□□□ -0.85
Cdx2P43241 Gm44204-201ENSMUST00000204722 737 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 AC158122.1-201ENSMUST00000227398 673 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Rpl14-ps1-201ENSMUST00000026901 653 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Ift43-201ENSMUST00000054565 773 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
Cdx2P43241 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC9.77□□□□□ -0.85
Cdx2P43241 Cd1d1-201ENSMUST00000029717 1946 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Sdk1-201ENSMUST00000074546 7063 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Rbm10-204ENSMUST00000115374 3564 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Gm43817-201ENSMUST00000196459 2262 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC9.77□□□□□ -0.85
Cdx2P43241 Zfp956-201ENSMUST00000101445 2761 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Fut8-202ENSMUST00000171770 2765 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Timm10b-203ENSMUST00000106783 3273 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Gm20953-201ENSMUST00000216399 2614 ntBASIC9.77□□□□□ -0.85
Cdx2P43241 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC9.77□□□□□ -0.85
Cdx2P43241 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Fcgr3-204ENSMUST00000169017 1324 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Cfap100-201ENSMUST00000062750 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
Cdx2P43241 Pcdhga1-201ENSMUST00000194190 4692 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC9.77□□□□□ -0.85
Cdx2P43241 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Cdx2P43241 A830018L16Rik-203ENSMUST00000137824 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm32540-201ENSMUST00000207174 1872 ntTSL 5 BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm45847-201ENSMUST00000209402 1880 ntTSL 3 BASIC9.76□□□□□ -0.85
Cdx2P43241 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 AC153506.1-201ENSMUST00000218768 2915 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Cers3-201ENSMUST00000066475 3250 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Anks1b-203ENSMUST00000099368 2799 ntTSL 5 BASIC9.76□□□□□ -0.85
Cdx2P43241 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Fermt1-201ENSMUST00000038280 4915 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
Cdx2P43241 Nphs1-203ENSMUST00000126297 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm6721-201ENSMUST00000218353 1445 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 H2-T3-204ENSMUST00000102675 2312 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Wdcp-201ENSMUST00000053034 2892 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC9.76□□□□□ -0.85
Cdx2P43241 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Phf21a-205ENSMUST00000111291 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm13413-201ENSMUST00000120953 602 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Gm12415-201ENSMUST00000141637 512 ntTSL 3 BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm25426-201ENSMUST00000157606 170 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Gm9075-201ENSMUST00000168738 794 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Gm20467-201ENSMUST00000172872 994 ntTSL 3 BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm5561-201ENSMUST00000178932 480 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Gm6946-201ENSMUST00000182237 987 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Mpv17-204ENSMUST00000200864 878 ntAPPRIS P3 TSL 3 BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm33024-201ENSMUST00000203143 633 ntTSL 3 BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm45225-201ENSMUST00000206852 1139 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Gm19121-201ENSMUST00000215720 1022 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 CT571271.1-201ENSMUST00000227071 670 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 AC116390.1-201ENSMUST00000227975 670 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Gm6378-201ENSMUST00000084199 444 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Olfr1330-201ENSMUST00000094830 948 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Cdx2P43241 Tbce-201ENSMUST00000039894 1844 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Camk1d-201ENSMUST00000044009 6962 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm42879-201ENSMUST00000198656 2214 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Gm45728-201ENSMUST00000211475 2979 ntBASIC9.76□□□□□ -0.85
Cdx2P43241 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
Cdx2P43241 Gm16982-201ENSMUST00000181275 2620 ntTSL 2 BASIC9.76□□□□□ -0.85
Cdx2P43241 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Cdx2P43241 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms