Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Olfr764-ps1-201ENSMUST00000204763 2854 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm43366-201ENSMUST00000199829 2655 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Rnf13-201ENSMUST00000041826 2678 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Polr3f-201ENSMUST00000028914 4403 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Hdhd2-201ENSMUST00000026485 2357 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Adora3-201ENSMUST00000000574 2370 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Zfp352-202ENSMUST00000107129 2276 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm42449-201ENSMUST00000200349 2258 ntBASIC8.41□□□□□ -1.06
Hmgb3O54879 Slc41a2-201ENSMUST00000039956 4742 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Tcn2-202ENSMUST00000109988 1957 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Gm20658-202ENSMUST00000177059 1950 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Fgd1-202ENSMUST00000112685 3240 ntTSL 5 BASIC8.41□□□□□ -1.06
Hmgb3O54879 Erc1-201ENSMUST00000032279 8356 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Hmgb3O54879 Nmrk2-201ENSMUST00000005069 1854 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Zfp42-201ENSMUST00000082120 1772 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Cpt1b-201ENSMUST00000109313 2895 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Tmem87a-201ENSMUST00000090042 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm44745-201ENSMUST00000206563 2723 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm16059-201ENSMUST00000135583 3778 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Ap5s1-203ENSMUST00000110208 1521 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Vmn1r26-204ENSMUST00000228951 4591 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Strip2-202ENSMUST00000115224 3524 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Vmn1r38-202ENSMUST00000227493 3486 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Abca1-201ENSMUST00000030010 10262 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm26815-201ENSMUST00000181200 3366 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Dyrk1a-203ENSMUST00000122284 2356 ntTSL 5 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Tm4sf1-201ENSMUST00000029376 1436 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Zfp58-201ENSMUST00000076123 2391 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm17980-201ENSMUST00000217977 2349 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Rnf121-201ENSMUST00000089052 2344 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Slc44a4-202ENSMUST00000169230 2246 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Dcx-204ENSMUST00000112856 1333 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Fxr1-208ENSMUST00000200392 3014 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Mir680-2-201ENSMUST00000102163 110 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm23251-201ENSMUST00000103773 110 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm15198-201ENSMUST00000117283 177 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm15352-201ENSMUST00000118696 270 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm14231-201ENSMUST00000120090 592 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm15197-201ENSMUST00000120526 478 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm14277-201ENSMUST00000121195 360 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm11736-201ENSMUST00000121468 505 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm3828-201ENSMUST00000121817 257 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm22144-201ENSMUST00000157402 102 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Platr17-201ENSMUST00000172817 807 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Mir6366-201ENSMUST00000184472 82 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm10774-201ENSMUST00000188689 204 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Gstp-ps-201ENSMUST00000195526 631 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC8.4□□□□□ -1.06
Hmgb3O54879 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Kalrn-203ENSMUST00000114947 2922 ntTSL 5 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Limk2-202ENSMUST00000101640 3711 ntTSL 5 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Phf21a-208ENSMUST00000111294 3710 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Ephb4-205ENSMUST00000166239 3741 ntAPPRIS P3 TSL 5 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Fam53b-206ENSMUST00000106168 3630 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Rhbdd1-201ENSMUST00000027322 3636 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Gm11100-201ENSMUST00000112652 1951 ntTSL 5 BASIC8.4□□□□□ -1.06
Hmgb3O54879 Tbx20-201ENSMUST00000052946 9091 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
Hmgb3O54879 Ctc1-201ENSMUST00000021278 4164 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.07
Hmgb3O54879 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
Hmgb3O54879 Adgrl3-219ENSMUST00000122356 4853 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.07
Hmgb3O54879 Gm37058-201ENSMUST00000193393 1644 ntBASIC8.4□□□□□ -1.07
Hmgb3O54879 Pik3r4-210ENSMUST00000191268 4756 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 4933414I15Rik-201ENSMUST00000109123 2206 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Hdac7-204ENSMUST00000116409 4113 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Abi2-210ENSMUST00000189980 4115 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Igsf11-202ENSMUST00000114706 1578 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Gm6024-201ENSMUST00000117850 1558 ntBASIC8.39□□□□□ -1.07
Hmgb3O54879 Platr9-202ENSMUST00000149572 1556 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 4932702P03Rik-202ENSMUST00000151220 2792 ntTSL 2 BASIC8.39□□□□□ -1.07
Hmgb3O54879 Nfatc1-201ENSMUST00000035800 4505 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Slc22a13-201ENSMUST00000084797 2001 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Gm42638-201ENSMUST00000196065 2587 ntBASIC8.39□□□□□ -1.07
Hmgb3O54879 Foxr1-201ENSMUST00000098837 1968 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Kirrel3-208ENSMUST00000188933 3643 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Col6a1-201ENSMUST00000001147 4100 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Zfp61-201ENSMUST00000077780 2480 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Unc13d-202ENSMUST00000106450 4046 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
Hmgb3O54879 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Micu1-212ENSMUST00000179709 1814 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC8.39□□□□□ -1.07
Hmgb3O54879 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC8.39□□□□□ -1.07
Hmgb3O54879 Gm16166-201ENSMUST00000118291 787 ntBASIC8.39□□□□□ -1.07
Hmgb3O54879 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC8.39□□□□□ -1.07
Hmgb3O54879 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Gm16165-201ENSMUST00000160140 795 ntBASIC8.39□□□□□ -1.07
Retrieved 100 of 76,532 protein–RNA pairs in 98.5 ms