Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Traf1P39428 Unc79-202ENSMUST00000101099 8874 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Traf1P39428 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Kansl1-201ENSMUST00000018556 5061 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Acbd5-212ENSMUST00000227663 4566 ntAPPRIS ALT2 BASIC11.98□□□□□ -0.49
Traf1P39428 Mid1-201ENSMUST00000036753 3753 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Camk2g-202ENSMUST00000080440 3604 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Smarca5-ps-201ENSMUST00000121843 3123 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Ticam1-201ENSMUST00000058136 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Clp1-203ENSMUST00000165219 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Nr1h4-201ENSMUST00000058126 1964 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Baat-201ENSMUST00000043056 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Gm10643-201ENSMUST00000098592 1577 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Traf1P39428 C030014I23Rik-204ENSMUST00000217463 1370 ntTSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 4930447F24Rik-201ENSMUST00000194140 1341 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Defb48-201ENSMUST00000100493 445 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Skint7-202ENSMUST00000106568 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Gm11771-201ENSMUST00000118124 732 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Gm13792-201ENSMUST00000121350 423 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Ndufb5-202ENSMUST00000121778 574 ntTSL 3 BASIC11.98□□□□□ -0.49
Traf1P39428 Gm6939-201ENSMUST00000122029 864 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Gm13393-201ENSMUST00000141935 396 ntTSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC11.98□□□□□ -0.49
Traf1P39428 Ubl5-203ENSMUST00000160124 501 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Traf1P39428 Rian-210ENSMUST00000182689 295 ntTSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Gm4960-201ENSMUST00000182928 1001 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Gm37232-201ENSMUST00000194887 367 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Ighv1-70-201ENSMUST00000196509 351 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Nme6-206ENSMUST00000197627 905 ntTSL 3 BASIC11.98□□□□□ -0.49
Traf1P39428 Gm42689-201ENSMUST00000202403 404 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Gm30055-201ENSMUST00000203175 803 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Rarres2-203ENSMUST00000204182 672 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Gm44540-201ENSMUST00000205640 354 ntBASIC11.98□□□□□ -0.49
Traf1P39428 AC102523.1-201ENSMUST00000228706 1144 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Nmb-201ENSMUST00000026817 705 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Olfr1417-201ENSMUST00000061235 948 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Traf1P39428 Gm8894-201ENSMUST00000074642 666 ntBASIC11.98□□□□□ -0.49
Traf1P39428 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Traf1P39428 Idua-202ENSMUST00000112563 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Slc14a2-201ENSMUST00000025434 2793 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Actbl2-201ENSMUST00000054716 2737 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Traf1P39428 Stxbp5l-206ENSMUST00000114787 4394 ntAPPRIS P3 TSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Tsc2-201ENSMUST00000097373 6018 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Arih2-201ENSMUST00000013338 3924 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Gm39464-201ENSMUST00000214091 2169 ntTSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 Cstf1-201ENSMUST00000116375 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Usp11-201ENSMUST00000033383 3467 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Traf1P39428 Hormad2-202ENSMUST00000109948 1969 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Traf1P39428 1700048O20Rik-202ENSMUST00000214777 1900 ntTSL 3 BASIC11.98□□□□□ -0.49
Traf1P39428 Zfp605-202ENSMUST00000112528 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Traf1P39428 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Prl8a1-202ENSMUST00000095926 1682 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Pax6-206ENSMUST00000111086 2601 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Fam234a-202ENSMUST00000118487 2629 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Hmox1-201ENSMUST00000005548 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 AC159810.1-201ENSMUST00000214838 1480 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Zc3hav1-201ENSMUST00000031850 3400 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Slc10a4-202ENSMUST00000201304 1419 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 A1cf-204ENSMUST00000224564 1432 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Fmod-201ENSMUST00000048183 3120 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Ptpre-205ENSMUST00000210833 2209 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 A930003A15Rik-201ENSMUST00000100083 746 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Gm24471-201ENSMUST00000104485 131 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Gstm6-204ENSMUST00000106684 1179 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Gm15746-201ENSMUST00000120684 1027 ntBASIC11.97□□□□□ -0.49
Traf1P39428 2010204K13Rik-203ENSMUST00000150671 885 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Muc2-202ENSMUST00000167366 711 ntTSL 5 BASIC11.97□□□□□ -0.49
Traf1P39428 Gm26978-201ENSMUST00000182843 304 ntTSL 3 BASIC11.97□□□□□ -0.49
Traf1P39428 Mir6360-201ENSMUST00000184278 126 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Gm28505-201ENSMUST00000190466 680 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Gm8022-201ENSMUST00000191763 904 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Gm36028-202ENSMUST00000205931 1161 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Traf1P39428 Gm6008-201ENSMUST00000206542 874 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Gm18256-201ENSMUST00000209087 907 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Lcn3-201ENSMUST00000028304 684 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Gm9531-201ENSMUST00000055820 638 ntTSL 3 BASIC11.97□□□□□ -0.49
Traf1P39428 Tceanc2-203ENSMUST00000058585 766 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Traf1P39428 Rps3a3-201ENSMUST00000074680 795 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Traf1P39428 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC11.97□□□□□ -0.49
Traf1P39428 Cep250-202ENSMUST00000094421 7919 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Traf1P39428 Mbtd1-206ENSMUST00000107854 5232 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Fhdc1-201ENSMUST00000091002 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Hmgb2-201ENSMUST00000067925 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Cfap61-202ENSMUST00000118002 3230 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Ttll9-201ENSMUST00000099197 1797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Il16-203ENSMUST00000145610 3183 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Dytn-201ENSMUST00000090313 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Gm31138-201ENSMUST00000212296 1705 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 AC242690.1-202ENSMUST00000214616 1742 ntTSL 5 BASIC11.97□□□□□ -0.49
Traf1P39428 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC11.97□□□□□ -0.49
Traf1P39428 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 71.4 ms