Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm37835-201ENSMUST00000193305 361 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm6677-201ENSMUST00000195100 441 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm46328-201ENSMUST00000217924 976 ntTSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 CT025618.1-203ENSMUST00000227008 589 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 CT025679.1-201ENSMUST00000227106 449 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 AC122035.1-201ENSMUST00000227576 1016 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Olfr582-201ENSMUST00000098212 960 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Prkcd-208ENSMUST00000112211 2851 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 1700030K09Rik-201ENSMUST00000064853 2887 ntAPPRIS P2 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Mis18bp1-201ENSMUST00000052201 4017 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Serpinb9c-201ENSMUST00000021837 1902 ntAPPRIS ALT2 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Cdc25b-202ENSMUST00000079857 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Tmprss7-201ENSMUST00000114562 2587 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Naip1-201ENSMUST00000022142 5464 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Mmp9-201ENSMUST00000017881 3175 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Prdx3-201ENSMUST00000025961 1478 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Rimbp2-207ENSMUST00000200470 4083 ntAPPRIS ALT2 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Mov10-201ENSMUST00000002297 3498 ntAPPRIS ALT1 TSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Cyld-205ENSMUST00000209532 7990 ntAPPRIS ALT1 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm4884-201ENSMUST00000164422 2852 ntAPPRIS P1 TSL 2 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Scml4-202ENSMUST00000105494 4166 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Plce1-201ENSMUST00000169713 9439 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Irf9-203ENSMUST00000134863 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Zdhhc9-201ENSMUST00000037960 2982 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Hemgn-201ENSMUST00000071096 2321 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Harbi1-201ENSMUST00000090608 2308 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Rep15-201ENSMUST00000036194 1662 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm26805-201ENSMUST00000181885 3089 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Dpp6-202ENSMUST00000101471 4491 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Park2-209ENSMUST00000191124 3202 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Rpgrip1-213ENSMUST00000181401 3963 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Kat6a-201ENSMUST00000044331 9113 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Kcnh6-201ENSMUST00000001965 3368 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Nedd4l-211ENSMUST00000226058 3393 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Setd5-203ENSMUST00000113157 6527 ntTSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Med12-202ENSMUST00000087956 6746 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Hnrnpc-201ENSMUST00000111610 2847 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Hnrnpc-202ENSMUST00000164655 2843 ntTSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Pla2g4e-201ENSMUST00000090071 4477 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Toe1-201ENSMUST00000030451 2090 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 4930503B20Rik-201ENSMUST00000049703 2080 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm23272-201ENSMUST00000104053 129 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm14127-201ENSMUST00000117906 678 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm13284-201ENSMUST00000121020 547 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Pla2g1b-204ENSMUST00000145785 419 ntTSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm23699-201ENSMUST00000158835 135 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm7583-201ENSMUST00000182941 1005 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm4654-201ENSMUST00000183305 982 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 CT025694.1-201ENSMUST00000226188 934 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Rcbtb2-201ENSMUST00000022702 2971 ntAPPRIS P2 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 A1cf-201ENSMUST00000075838 2989 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm25580-201ENSMUST00000083409 327 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Gm7405-201ENSMUST00000121476 1337 ntBASIC8.43□□□□□ -1.06
Hmgb3O54879 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Arhgap6-205ENSMUST00000112131 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 AC157476.2-201ENSMUST00000217574 3200 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Olfr1278-205ENSMUST00000215210 6901 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Ces2h-201ENSMUST00000172032 2445 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Ilf3-201ENSMUST00000067646 3549 ntAPPRIS P4 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Zfp30-201ENSMUST00000032803 3558 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Pik3r4-201ENSMUST00000065778 4711 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Tulp4-201ENSMUST00000039655 9687 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Zfp354a-201ENSMUST00000020628 1719 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Bckdk-207ENSMUST00000206745 1702 ntTSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Itgb6-201ENSMUST00000028348 2995 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Hmgb3O54879 Ccdc33-210ENSMUST00000215944 3012 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
Hmgb3O54879 Pik3c3-203ENSMUST00000115812 3257 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Hmgb3O54879 Syncrip-207ENSMUST00000174269 3286 ntTSL 5 BASIC8.42□□□□□ -1.06
Hmgb3O54879 Gm42521-201ENSMUST00000199190 2040 ntBASIC8.42□□□□□ -1.06
Hmgb3O54879 Blnk-201ENSMUST00000054769 2097 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms