Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Gm17070-201ENSMUST00000170463 784 ntBASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Gm20821-202ENSMUST00000180352 684 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Gm7516-201ENSMUST00000186198 706 ntBASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Gm28893-201ENSMUST00000190951 1108 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Gm3527-201ENSMUST00000198905 460 ntBASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Gm7904-201ENSMUST00000217049 465 ntBASIC10.62□□□□□ -0.71
Trub1Q8C0D0 AC100406.1-201ENSMUST00000217305 480 ntBASIC10.62□□□□□ -0.71
Trub1Q8C0D0 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Gm26690-201ENSMUST00000181457 1997 ntTSL 5 BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Nupl1-202ENSMUST00000041905 3913 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Atg4b-201ENSMUST00000027502 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Pole-202ENSMUST00000112481 1523 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Fga-202ENSMUST00000166581 2587 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Gm45663-201ENSMUST00000210429 1632 ntBASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Zdhhc9-201ENSMUST00000037960 2982 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Col4a6-201ENSMUST00000101205 6648 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trub1Q8C0D0 Pms1-201ENSMUST00000027267 3054 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Hps4-202ENSMUST00000112359 3345 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Dclk1-213ENSMUST00000199702 2922 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm8848-201ENSMUST00000197270 1343 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 E2f7-204ENSMUST00000173471 3567 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Elmo3-201ENSMUST00000109375 3189 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Ttll7-205ENSMUST00000170055 6075 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 D3Ertd751e-201ENSMUST00000026867 1989 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Cct8l1-201ENSMUST00000045016 1961 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Lims1-201ENSMUST00000020077 1565 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 1700030K09Rik-201ENSMUST00000064853 2887 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Cabin1-201ENSMUST00000001712 7417 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Mettl8-204ENSMUST00000112186 2347 ntAPPRIS P2 TSL 2 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Casp14-201ENSMUST00000005488 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Hdac9-208ENSMUST00000211107 1683 ntTSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Xrcc5-201ENSMUST00000027379 2555 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 4930417O13Rik-203ENSMUST00000204911 3458 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Kcnv1-201ENSMUST00000022967 4389 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 4930480K15Rik-201ENSMUST00000162121 2199 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Cx3cl1-201ENSMUST00000034230 3315 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Lime1-202ENSMUST00000108804 960 ntTSL 3 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Prelid3b-203ENSMUST00000120822 622 ntTSL 3 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Ppt1-204ENSMUST00000121870 986 ntTSL 2 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 3110039M20Rik-201ENSMUST00000127041 868 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 4930538E20Rik-201ENSMUST00000131383 546 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm20455-201ENSMUST00000174100 1138 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm25953-201ENSMUST00000175338 83 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Vmn2r-ps13-201ENSMUST00000176920 606 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm8601-201ENSMUST00000182096 909 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm9146-201ENSMUST00000182254 1006 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm6794-201ENSMUST00000203829 457 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm44939-201ENSMUST00000206939 814 ntTSL 3 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm3791-201ENSMUST00000220790 768 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 AC101205.2-201ENSMUST00000226206 715 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 n-R5s71-201ENSMUST00000093668 119 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Akap1-203ENSMUST00000107904 2673 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gramd1b-213ENSMUST00000211853 2659 ntTSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Cep70-207ENSMUST00000190715 1768 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Sec31b-201ENSMUST00000063632 3939 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Hmbox1-201ENSMUST00000022544 3396 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Ehmt1-202ENSMUST00000091348 4615 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Sfi1-202ENSMUST00000081318 3969 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Dcstamp-201ENSMUST00000022913 1997 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Sh2d3c-201ENSMUST00000074248 3092 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Gm43412-201ENSMUST00000197455 2818 ntBASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Mamld1-201ENSMUST00000082088 4796 ntAPPRIS P4 TSL 5 BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Sdhc-202ENSMUST00000111336 3171 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Slc35b3-201ENSMUST00000021870 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Itgax-201ENSMUST00000033053 4046 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Trub1Q8C0D0 Lox-202ENSMUST00000171470 4468 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Prr27-202ENSMUST00000101056 1337 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Napepld-202ENSMUST00000115217 3954 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Ms4a7-203ENSMUST00000067532 1334 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Col5a2-201ENSMUST00000086430 6625 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Mepe-201ENSMUST00000066207 1682 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Slc10a1-201ENSMUST00000095572 1674 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Armcx2-202ENSMUST00000113193 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Ctsa-201ENSMUST00000017904 3674 ntAPPRIS P4 TSL 5 BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Trub1Q8C0D0 6030469F06Rik-202ENSMUST00000218473 1537 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms