Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.75■■□□□ 1.07
Prpf40aQ9R1C7 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Prpf40aQ9R1C7 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.75■■□□□ 1.07
Prpf40aQ9R1C7 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Prpf40aQ9R1C7 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Prpf40aQ9R1C7 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Prpf40aQ9R1C7 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Prpf40aQ9R1C7 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Prpf40aQ9R1C7 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Prpf40aQ9R1C7 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Prpf40aQ9R1C7 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.73■■□□□ 1.07
Prpf40aQ9R1C7 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.73■■□□□ 1.07
Prpf40aQ9R1C7 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.73■■□□□ 1.07
Prpf40aQ9R1C7 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Prpf40aQ9R1C7 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Prpf40aQ9R1C7 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Gm43034-201ENSMUST00000198678 1364 ntBASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prpf40aQ9R1C7 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Prpf40aQ9R1C7 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Prpf40aQ9R1C7 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Prpf40aQ9R1C7 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.71■■□□□ 1.07
Prpf40aQ9R1C7 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Prpf40aQ9R1C7 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Prpf40aQ9R1C7 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Prpf40aQ9R1C7 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.71■■□□□ 1.07
Prpf40aQ9R1C7 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prpf40aQ9R1C7 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prpf40aQ9R1C7 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Prpf40aQ9R1C7 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prpf40aQ9R1C7 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Prpf40aQ9R1C7 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prpf40aQ9R1C7 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prpf40aQ9R1C7 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Prpf40aQ9R1C7 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Prpf40aQ9R1C7 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Prpf40aQ9R1C7 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Prpf40aQ9R1C7 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prpf40aQ9R1C7 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Prpf40aQ9R1C7 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Prpf40aQ9R1C7 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Prpf40aQ9R1C7 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Prpf40aQ9R1C7 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Prpf40aQ9R1C7 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.66■■□□□ 1.06
Prpf40aQ9R1C7 Mir6236-201ENSMUST00000184437 123 ntBASIC21.66■■□□□ 1.06
Prpf40aQ9R1C7 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Prpf40aQ9R1C7 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Prpf40aQ9R1C7 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Prpf40aQ9R1C7 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prpf40aQ9R1C7 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
Prpf40aQ9R1C7 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Prpf40aQ9R1C7 Gm21956-201ENSMUST00000179946 522 ntBASIC21.64■■□□□ 1.05
Prpf40aQ9R1C7 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Prpf40aQ9R1C7 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Prpf40aQ9R1C7 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Prpf40aQ9R1C7 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Prpf40aQ9R1C7 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Prpf40aQ9R1C7 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Prpf40aQ9R1C7 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms