Protein–RNA interactions for Protein: Q8VEE1

Lmcd1, LIM and cysteine-rich domains protein 1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmcd1Q8VEE1 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.3■■□□□ 1
Lmcd1Q8VEE1 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.3■■□□□ 1
Lmcd1Q8VEE1 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Lmcd1Q8VEE1 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC21.3■■□□□ 1
Lmcd1Q8VEE1 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC21.29■■□□□ 1
Lmcd1Q8VEE1 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.29■■□□□ 1
Lmcd1Q8VEE1 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Lmcd1Q8VEE1 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Lmcd1Q8VEE1 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.29■■□□□ 1
Lmcd1Q8VEE1 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lmcd1Q8VEE1 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC21.29■■□□□ 1
Lmcd1Q8VEE1 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Gm13146-201ENSMUST00000118508 780 ntBASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Mir6236-201ENSMUST00000184437 123 ntBASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Gm44878-201ENSMUST00000205812 1295 ntBASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Lmcd1Q8VEE1 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Lmcd1Q8VEE1 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Lmcd1Q8VEE1 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Lmcd1Q8VEE1 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.27■■□□□ 1
Lmcd1Q8VEE1 Trmt13-210ENSMUST00000198454 880 ntBASIC21.27■■□□□ 1
Lmcd1Q8VEE1 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Lmcd1Q8VEE1 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
Lmcd1Q8VEE1 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Lmcd1Q8VEE1 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmcd1Q8VEE1 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Lmcd1Q8VEE1 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lmcd1Q8VEE1 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Lmcd1Q8VEE1 Gm29994-201ENSMUST00000195495 1193 ntBASIC21.24■□□□□ 0.99
Lmcd1Q8VEE1 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Lmcd1Q8VEE1 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC21.24■□□□□ 0.99
Lmcd1Q8VEE1 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lmcd1Q8VEE1 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lmcd1Q8VEE1 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Gm6211-202ENSMUST00000167849 925 ntBASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmcd1Q8VEE1 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 AC122769.4-201ENSMUST00000228166 901 ntBASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmcd1Q8VEE1 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Lmcd1Q8VEE1 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Lmcd1Q8VEE1 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lmcd1Q8VEE1 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lmcd1Q8VEE1 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.21■□□□□ 0.99
Lmcd1Q8VEE1 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.21■□□□□ 0.99
Lmcd1Q8VEE1 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lmcd1Q8VEE1 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lmcd1Q8VEE1 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Lmcd1Q8VEE1 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lmcd1Q8VEE1 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Lmcd1Q8VEE1 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC21.2■□□□□ 0.98
Lmcd1Q8VEE1 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Lmcd1Q8VEE1 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lmcd1Q8VEE1 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Lmcd1Q8VEE1 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms