Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trub1Q8C0D0 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.5■□□□□ 0.87
Trub1Q8C0D0 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trub1Q8C0D0 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trub1Q8C0D0 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Gm9847-201ENSMUST00000052528 599 ntBASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Trub1Q8C0D0 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.46■□□□□ 0.87
Trub1Q8C0D0 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trub1Q8C0D0 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.45■□□□□ 0.86
Trub1Q8C0D0 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trub1Q8C0D0 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trub1Q8C0D0 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trub1Q8C0D0 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trub1Q8C0D0 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trub1Q8C0D0 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.44■□□□□ 0.86
Trub1Q8C0D0 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trub1Q8C0D0 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trub1Q8C0D0 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trub1Q8C0D0 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.43■□□□□ 0.86
Trub1Q8C0D0 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Trub1Q8C0D0 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms