Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Lig4Q8BTF7 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Lig4Q8BTF7 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Lig4Q8BTF7 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.02■□□□□ 0.96
Lig4Q8BTF7 Gm26833-201ENSMUST00000180899 440 ntBASIC21.02■□□□□ 0.96
Lig4Q8BTF7 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Lig4Q8BTF7 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.95
Lig4Q8BTF7 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lig4Q8BTF7 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Lig4Q8BTF7 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21■□□□□ 0.95
Lig4Q8BTF7 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21■□□□□ 0.95
Lig4Q8BTF7 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Lig4Q8BTF7 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Lig4Q8BTF7 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Lig4Q8BTF7 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC21■□□□□ 0.95
Lig4Q8BTF7 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lig4Q8BTF7 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Smad6-203ENSMUST00000179458 273 ntBASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lig4Q8BTF7 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.97■□□□□ 0.95
Lig4Q8BTF7 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Lig4Q8BTF7 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Lig4Q8BTF7 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Lig4Q8BTF7 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.97■□□□□ 0.95
Lig4Q8BTF7 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig4Q8BTF7 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.97■□□□□ 0.95
Lig4Q8BTF7 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig4Q8BTF7 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lig4Q8BTF7 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lig4Q8BTF7 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig4Q8BTF7 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.95■□□□□ 0.94
Lig4Q8BTF7 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
Lig4Q8BTF7 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
Lig4Q8BTF7 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig4Q8BTF7 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig4Q8BTF7 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig4Q8BTF7 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Gm40848-201ENSMUST00000221998 324 ntBASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lig4Q8BTF7 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Lig4Q8BTF7 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
Lig4Q8BTF7 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig4Q8BTF7 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Lig4Q8BTF7 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Lig4Q8BTF7 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms