Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Trim56Q80VI1 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC23.54■■□□□ 1.36
Trim56Q80VI1 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC23.54■■□□□ 1.36
Trim56Q80VI1 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Trim56Q80VI1 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Trim56Q80VI1 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Trim56Q80VI1 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Trim56Q80VI1 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Trim56Q80VI1 AC165080.2-201ENSMUST00000217491 1530 ntBASIC23.54■■□□□ 1.36
Trim56Q80VI1 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Trim56Q80VI1 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC23.53■■□□□ 1.36
Trim56Q80VI1 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Trim56Q80VI1 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Trim56Q80VI1 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Trim56Q80VI1 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC23.53■■□□□ 1.36
Trim56Q80VI1 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Trim56Q80VI1 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Trim56Q80VI1 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Trim56Q80VI1 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Trim56Q80VI1 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Trim56Q80VI1 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
Trim56Q80VI1 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC23.52■■□□□ 1.35
Trim56Q80VI1 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Cdkn3-203ENSMUST00000227149 1952 ntBASIC23.51■■□□□ 1.35
Trim56Q80VI1 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC23.51■■□□□ 1.35
Trim56Q80VI1 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trim56Q80VI1 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
Trim56Q80VI1 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
Trim56Q80VI1 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC23.49■■□□□ 1.35
Trim56Q80VI1 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Trim56Q80VI1 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
Trim56Q80VI1 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Trim56Q80VI1 Gm43909-201ENSMUST00000203443 1876 ntBASIC23.49■■□□□ 1.35
Trim56Q80VI1 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trim56Q80VI1 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
Trim56Q80VI1 Smad6-203ENSMUST00000179458 273 ntBASIC23.48■■□□□ 1.35
Trim56Q80VI1 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trim56Q80VI1 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trim56Q80VI1 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trim56Q80VI1 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trim56Q80VI1 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trim56Q80VI1 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trim56Q80VI1 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Trim56Q80VI1 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Trim56Q80VI1 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Trim56Q80VI1 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC23.47■■□□□ 1.35
Trim56Q80VI1 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC23.47■■□□□ 1.35
Trim56Q80VI1 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
Trim56Q80VI1 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Trim56Q80VI1 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Trim56Q80VI1 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Trim56Q80VI1 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC23.46■■□□□ 1.35
Trim56Q80VI1 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Trim56Q80VI1 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Trim56Q80VI1 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
Trim56Q80VI1 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Trim56Q80VI1 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Trim56Q80VI1 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Trim56Q80VI1 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Trim56Q80VI1 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC23.45■■□□□ 1.34
Trim56Q80VI1 Gm21168-201ENSMUST00000199646 1096 ntBASIC23.45■■□□□ 1.34
Trim56Q80VI1 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Trim56Q80VI1 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC23.45■■□□□ 1.34
Trim56Q80VI1 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
Trim56Q80VI1 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
Trim56Q80VI1 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Trim56Q80VI1 Gm15043-201ENSMUST00000118843 1543 ntBASIC23.44■■□□□ 1.34
Trim56Q80VI1 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
Trim56Q80VI1 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC23.44■■□□□ 1.34
Trim56Q80VI1 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Trim56Q80VI1 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
Trim56Q80VI1 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
Trim56Q80VI1 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
Trim56Q80VI1 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trim56Q80VI1 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
Trim56Q80VI1 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC23.43■■□□□ 1.34
Trim56Q80VI1 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trim56Q80VI1 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Trim56Q80VI1 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trim56Q80VI1 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trim56Q80VI1 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trim56Q80VI1 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 15 ms