Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC22.09■■□□□ 1.13
Smarca1Q6PGB8 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Gm5576-201ENSMUST00000075809 1236 ntBASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC22.08■■□□□ 1.13
Smarca1Q6PGB8 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Smarca1Q6PGB8 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
Smarca1Q6PGB8 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Smarca1Q6PGB8 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Smarca1Q6PGB8 Serp2-204ENSMUST00000228055 705 ntBASIC22.07■■□□□ 1.12
Smarca1Q6PGB8 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Smarca1Q6PGB8 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC22.07■■□□□ 1.12
Smarca1Q6PGB8 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Smarca1Q6PGB8 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
Smarca1Q6PGB8 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Smarca1Q6PGB8 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
Smarca1Q6PGB8 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
Smarca1Q6PGB8 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Smarca1Q6PGB8 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Smarca1Q6PGB8 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Smarca1Q6PGB8 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Gm6139-201ENSMUST00000079261 882 ntBASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Smarca1Q6PGB8 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
Smarca1Q6PGB8 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Smarca1Q6PGB8 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Smarca1Q6PGB8 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC22.03■■□□□ 1.12
Smarca1Q6PGB8 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Smarca1Q6PGB8 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Smarca1Q6PGB8 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Smarca1Q6PGB8 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Smarca1Q6PGB8 Mir7075-201ENSMUST00000184187 82 ntBASIC22.02■■□□□ 1.12
Smarca1Q6PGB8 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Smarca1Q6PGB8 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Smarca1Q6PGB8 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Smarca1Q6PGB8 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.11
Smarca1Q6PGB8 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Smarca1Q6PGB8 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC22.02■■□□□ 1.11
Smarca1Q6PGB8 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.11
Smarca1Q6PGB8 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC22.01■■□□□ 1.11
Smarca1Q6PGB8 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC22■■□□□ 1.11
Smarca1Q6PGB8 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC22■■□□□ 1.11
Smarca1Q6PGB8 Iqck-206ENSMUST00000208658 2891 ntBASIC22■■□□□ 1.11
Smarca1Q6PGB8 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC22■■□□□ 1.11
Smarca1Q6PGB8 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC22■■□□□ 1.11
Smarca1Q6PGB8 Gm43909-201ENSMUST00000203443 1876 ntBASIC22■■□□□ 1.11
Smarca1Q6PGB8 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Smarca1Q6PGB8 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Smarca1Q6PGB8 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Smarca1Q6PGB8 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Smarca1Q6PGB8 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Smarca1Q6PGB8 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC21.99■■□□□ 1.11
Smarca1Q6PGB8 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
Smarca1Q6PGB8 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.99■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms