Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Col11a1Q61245 Gm5075-201ENSMUST00000196916 622 ntBASIC22.73■■□□□ 1.23
Col11a1Q61245 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC22.73■■□□□ 1.23
Col11a1Q61245 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC22.73■■□□□ 1.23
Col11a1Q61245 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
Col11a1Q61245 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC22.73■■□□□ 1.23
Col11a1Q61245 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Col11a1Q61245 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Col11a1Q61245 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Col11a1Q61245 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC22.72■■□□□ 1.23
Col11a1Q61245 Gm20049-201ENSMUST00000219950 730 ntBASIC22.72■■□□□ 1.23
Col11a1Q61245 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
Col11a1Q61245 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Col11a1Q61245 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
Col11a1Q61245 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC22.71■■□□□ 1.23
Col11a1Q61245 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC22.71■■□□□ 1.23
Col11a1Q61245 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Col11a1Q61245 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Col11a1Q61245 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
Col11a1Q61245 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Col11a1Q61245 Gm37856-201ENSMUST00000191634 999 ntBASIC22.71■■□□□ 1.23
Col11a1Q61245 Gm3807-201ENSMUST00000193520 1168 ntBASIC22.71■■□□□ 1.23
Col11a1Q61245 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC22.71■■□□□ 1.23
Col11a1Q61245 AC135637.1-201ENSMUST00000227750 365 ntBASIC22.71■■□□□ 1.23
Col11a1Q61245 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Col11a1Q61245 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Col11a1Q61245 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC22.7■■□□□ 1.22
Col11a1Q61245 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Col11a1Q61245 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Col11a1Q61245 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC22.7■■□□□ 1.22
Col11a1Q61245 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC22.7■■□□□ 1.22
Col11a1Q61245 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Col11a1Q61245 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Col11a1Q61245 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC22.69■■□□□ 1.22
Col11a1Q61245 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Col11a1Q61245 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Col11a1Q61245 Gm6420-201ENSMUST00000193885 723 ntBASIC22.68■■□□□ 1.22
Col11a1Q61245 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC22.68■■□□□ 1.22
Col11a1Q61245 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Col11a1Q61245 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC22.68■■□□□ 1.22
Col11a1Q61245 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Col11a1Q61245 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Col11a1Q61245 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
Col11a1Q61245 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
Col11a1Q61245 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Col11a1Q61245 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Col11a1Q61245 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Col11a1Q61245 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Col11a1Q61245 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
Col11a1Q61245 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
Col11a1Q61245 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Col11a1Q61245 Gm10812-201ENSMUST00000099864 546 ntBASIC22.67■■□□□ 1.22
Col11a1Q61245 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Col11a1Q61245 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Col11a1Q61245 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Col11a1Q61245 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Col11a1Q61245 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Col11a1Q61245 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC22.66■■□□□ 1.22
Col11a1Q61245 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Col11a1Q61245 Gm22325-201ENSMUST00000158904 308 ntBASIC22.66■■□□□ 1.22
Col11a1Q61245 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Col11a1Q61245 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col11a1Q61245 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC22.65■■□□□ 1.22
Col11a1Q61245 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col11a1Q61245 Gm6365-201ENSMUST00000054711 744 ntBASIC22.65■■□□□ 1.22
Col11a1Q61245 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col11a1Q61245 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col11a1Q61245 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
Col11a1Q61245 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Col11a1Q61245 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC22.64■■□□□ 1.22
Col11a1Q61245 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC22.64■■□□□ 1.21
Col11a1Q61245 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Col11a1Q61245 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Col11a1Q61245 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Col11a1Q61245 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Col11a1Q61245 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Col11a1Q61245 Gm38205-201ENSMUST00000192243 258 ntBASIC22.63■■□□□ 1.21
Col11a1Q61245 Trmt13-210ENSMUST00000198454 880 ntBASIC22.63■■□□□ 1.21
Col11a1Q61245 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Col11a1Q61245 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC22.63■■□□□ 1.21
Col11a1Q61245 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Col11a1Q61245 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Col11a1Q61245 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Col11a1Q61245 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col11a1Q61245 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC22.61■■□□□ 1.21
Col11a1Q61245 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC22.61■■□□□ 1.21
Col11a1Q61245 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col11a1Q61245 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
Col11a1Q61245 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Col11a1Q61245 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col11a1Q61245 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col11a1Q61245 Gm29241-201ENSMUST00000189260 1096 ntBASIC22.61■■□□□ 1.21
Col11a1Q61245 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col11a1Q61245 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Col11a1Q61245 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Col11a1Q61245 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Col11a1Q61245 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Col11a1Q61245 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Col11a1Q61245 Gm10655-201ENSMUST00000098658 1397 ntBASIC22.6■■□□□ 1.21
Col11a1Q61245 Gm37415-201ENSMUST00000192265 2054 ntBASIC22.6■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms