Protein–RNA interactions for Protein: Q61112

Sdf4, 45 kDa calcium-binding protein, mousemouse

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdf4Q61112 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sdf4Q61112 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sdf4Q61112 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.08■□□□□ 0.81
Sdf4Q61112 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.08■□□□□ 0.81
Sdf4Q61112 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sdf4Q61112 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.08■□□□□ 0.81
Sdf4Q61112 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.08■□□□□ 0.81
Sdf4Q61112 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.08■□□□□ 0.81
Sdf4Q61112 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sdf4Q61112 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.07■□□□□ 0.8
Sdf4Q61112 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sdf4Q61112 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sdf4Q61112 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sdf4Q61112 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sdf4Q61112 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Sdf4Q61112 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sdf4Q61112 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Sdf4Q61112 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sdf4Q61112 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sdf4Q61112 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sdf4Q61112 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sdf4Q61112 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Sdf4Q61112 Gm21956-201ENSMUST00000179946 522 ntBASIC20.05■□□□□ 0.8
Sdf4Q61112 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.05■□□□□ 0.8
Sdf4Q61112 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.05■□□□□ 0.8
Sdf4Q61112 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sdf4Q61112 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sdf4Q61112 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sdf4Q61112 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sdf4Q61112 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sdf4Q61112 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.04■□□□□ 0.8
Sdf4Q61112 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sdf4Q61112 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Sdf4Q61112 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sdf4Q61112 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sdf4Q61112 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sdf4Q61112 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sdf4Q61112 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
Sdf4Q61112 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sdf4Q61112 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sdf4Q61112 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.03■□□□□ 0.8
Sdf4Q61112 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sdf4Q61112 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.03■□□□□ 0.8
Sdf4Q61112 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.03■□□□□ 0.8
Sdf4Q61112 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.03■□□□□ 0.8
Sdf4Q61112 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sdf4Q61112 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.03■□□□□ 0.8
Sdf4Q61112 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Sdf4Q61112 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Sdf4Q61112 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.02■□□□□ 0.8
Sdf4Q61112 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.02■□□□□ 0.8
Sdf4Q61112 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.02■□□□□ 0.8
Sdf4Q61112 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.02■□□□□ 0.8
Sdf4Q61112 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sdf4Q61112 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sdf4Q61112 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sdf4Q61112 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sdf4Q61112 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sdf4Q61112 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sdf4Q61112 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sdf4Q61112 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Sdf4Q61112 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Sdf4Q61112 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Sdf4Q61112 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sdf4Q61112 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Sdf4Q61112 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sdf4Q61112 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
Sdf4Q61112 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Sdf4Q61112 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sdf4Q61112 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sdf4Q61112 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20■□□□□ 0.79
Sdf4Q61112 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20■□□□□ 0.79
Sdf4Q61112 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sdf4Q61112 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sdf4Q61112 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20■□□□□ 0.79
Sdf4Q61112 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sdf4Q61112 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
Sdf4Q61112 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20■□□□□ 0.79
Sdf4Q61112 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Sdf4Q61112 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sdf4Q61112 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC19.99■□□□□ 0.79
Sdf4Q61112 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sdf4Q61112 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms