Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3bQ3ULL6 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Upf3bQ3ULL6 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Upf3bQ3ULL6 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Gm27454-201ENSMUST00000185090 204 ntBASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.2■□□□□ 0.98
Upf3bQ3ULL6 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC21.19■□□□□ 0.98
Upf3bQ3ULL6 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Upf3bQ3ULL6 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.19■□□□□ 0.98
Upf3bQ3ULL6 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3bQ3ULL6 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3bQ3ULL6 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3bQ3ULL6 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3bQ3ULL6 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Upf3bQ3ULL6 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3bQ3ULL6 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3bQ3ULL6 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3bQ3ULL6 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Upf3bQ3ULL6 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3bQ3ULL6 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3bQ3ULL6 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3bQ3ULL6 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3bQ3ULL6 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3bQ3ULL6 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Upf3bQ3ULL6 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC21.15■□□□□ 0.98
Upf3bQ3ULL6 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Upf3bQ3ULL6 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3bQ3ULL6 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3bQ3ULL6 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3bQ3ULL6 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3bQ3ULL6 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3bQ3ULL6 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3bQ3ULL6 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Upf3bQ3ULL6 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3bQ3ULL6 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3bQ3ULL6 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3bQ3ULL6 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.13■□□□□ 0.97
Upf3bQ3ULL6 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3bQ3ULL6 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Upf3bQ3ULL6 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3bQ3ULL6 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3bQ3ULL6 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3bQ3ULL6 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3bQ3ULL6 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms