Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm12527-201ENSMUST00000117967 564 ntBASIC16.92■□□□□ 0.3
Col8a1Q00780 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC16.92■□□□□ 0.3
Col8a1Q00780 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col8a1Q00780 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Col8a1Q00780 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col8a1Q00780 Gm4968-201ENSMUST00000071458 858 ntBASIC16.92■□□□□ 0.3
Col8a1Q00780 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Col8a1Q00780 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col8a1Q00780 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col8a1Q00780 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col8a1Q00780 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col8a1Q00780 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col8a1Q00780 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col8a1Q00780 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Col8a1Q00780 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col8a1Q00780 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col8a1Q00780 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Col8a1Q00780 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col8a1Q00780 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col8a1Q00780 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col8a1Q00780 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col8a1Q00780 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Col8a1Q00780 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Col8a1Q00780 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col8a1Q00780 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC16.9■□□□□ 0.3
Col8a1Q00780 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC16.9■□□□□ 0.3
Col8a1Q00780 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col8a1Q00780 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col8a1Q00780 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col8a1Q00780 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Col8a1Q00780 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col8a1Q00780 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col8a1Q00780 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col8a1Q00780 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col8a1Q00780 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Col8a1Q00780 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Col8a1Q00780 Gm8520-201ENSMUST00000186517 868 ntBASIC16.89■□□□□ 0.29
Col8a1Q00780 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col8a1Q00780 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col8a1Q00780 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col8a1Q00780 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC16.89■□□□□ 0.29
Col8a1Q00780 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC16.88■□□□□ 0.29
Col8a1Q00780 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC16.88■□□□□ 0.29
Col8a1Q00780 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col8a1Q00780 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col8a1Q00780 AC135963.1-201ENSMUST00000211640 717 ntBASIC16.88■□□□□ 0.29
Col8a1Q00780 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col8a1Q00780 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col8a1Q00780 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col8a1Q00780 Gm27045-201ENSMUST00000182145 1402 ntBASIC16.87■□□□□ 0.29
Col8a1Q00780 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col8a1Q00780 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Col8a1Q00780 AC115037.1-201ENSMUST00000223391 2173 ntBASIC16.87■□□□□ 0.29
Col8a1Q00780 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col8a1Q00780 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Col8a1Q00780 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC16.87■□□□□ 0.29
Col8a1Q00780 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Col8a1Q00780 Gm3807-201ENSMUST00000193520 1168 ntBASIC16.87■□□□□ 0.29
Col8a1Q00780 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
Col8a1Q00780 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col8a1Q00780 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col8a1Q00780 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC16.87■□□□□ 0.29
Col8a1Q00780 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col8a1Q00780 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col8a1Q00780 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col8a1Q00780 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col8a1Q00780 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.86■□□□□ 0.29
Col8a1Q00780 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col8a1Q00780 Gm42555-201ENSMUST00000199304 1039 ntBASIC16.86■□□□□ 0.29
Col8a1Q00780 AC137127.1-201ENSMUST00000213466 1078 ntBASIC16.86■□□□□ 0.29
Col8a1Q00780 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col8a1Q00780 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col8a1Q00780 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Col8a1Q00780 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Col8a1Q00780 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col8a1Q00780 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Col8a1Q00780 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC16.86■□□□□ 0.29
Col8a1Q00780 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Col8a1Q00780 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC16.85■□□□□ 0.29
Col8a1Q00780 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Col8a1Q00780 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col8a1Q00780 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Col8a1Q00780 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col8a1Q00780 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC16.84■□□□□ 0.29
Col8a1Q00780 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
Col8a1Q00780 Gm7977-201ENSMUST00000193787 748 ntBASIC16.84■□□□□ 0.29
Col8a1Q00780 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC16.84■□□□□ 0.29
Col8a1Q00780 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col8a1Q00780 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col8a1Q00780 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Col8a1Q00780 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms