Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdh11P55288 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Cdh11P55288 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Cdh11P55288 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
Cdh11P55288 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Gm9847-201ENSMUST00000052528 599 ntBASIC17.98■□□□□ 0.47
Cdh11P55288 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Cdh11P55288 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdh11P55288 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdh11P55288 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cdh11P55288 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdh11P55288 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cdh11P55288 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdh11P55288 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC17.96■□□□□ 0.47
Cdh11P55288 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdh11P55288 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC17.96■□□□□ 0.47
Cdh11P55288 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.96■□□□□ 0.47
Cdh11P55288 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdh11P55288 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.96■□□□□ 0.47
Cdh11P55288 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.96■□□□□ 0.47
Cdh11P55288 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cdh11P55288 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.95■□□□□ 0.46
Cdh11P55288 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.95■□□□□ 0.46
Cdh11P55288 Gm43034-201ENSMUST00000198678 1364 ntBASIC17.95■□□□□ 0.46
Cdh11P55288 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Cdh11P55288 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
Cdh11P55288 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Cdh11P55288 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdh11P55288 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdh11P55288 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdh11P55288 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdh11P55288 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Cdh11P55288 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
Cdh11P55288 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdh11P55288 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdh11P55288 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdh11P55288 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.94■□□□□ 0.46
Cdh11P55288 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.94■□□□□ 0.46
Cdh11P55288 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdh11P55288 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdh11P55288 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdh11P55288 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Cdh11P55288 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Cdh11P55288 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.93■□□□□ 0.46
Cdh11P55288 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.93■□□□□ 0.46
Cdh11P55288 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdh11P55288 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.93■□□□□ 0.46
Cdh11P55288 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdh11P55288 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdh11P55288 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC17.92■□□□□ 0.46
Cdh11P55288 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdh11P55288 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdh11P55288 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC17.91■□□□□ 0.46
Cdh11P55288 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Cdh11P55288 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdh11P55288 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Cdh11P55288 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Cdh11P55288 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdh11P55288 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdh11P55288 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdh11P55288 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdh11P55288 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Cdh11P55288 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdh11P55288 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdh11P55288 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdh11P55288 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms