Protein–RNA interactions for Protein: P50481

Lhx3, LIM/homeobox protein Lhx3, mousemouse

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lhx3P50481 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lhx3P50481 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Lhx3P50481 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lhx3P50481 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Lhx3P50481 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lhx3P50481 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.21■□□□□ 0.83
Lhx3P50481 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.21■□□□□ 0.83
Lhx3P50481 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Lhx3P50481 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Lhx3P50481 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.21■□□□□ 0.83
Lhx3P50481 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Lhx3P50481 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lhx3P50481 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.21■□□□□ 0.83
Lhx3P50481 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.2■□□□□ 0.82
Lhx3P50481 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Lhx3P50481 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Lhx3P50481 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lhx3P50481 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lhx3P50481 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Lhx3P50481 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lhx3P50481 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lhx3P50481 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lhx3P50481 Gm21168-201ENSMUST00000199646 1096 ntBASIC20.19■□□□□ 0.82
Lhx3P50481 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.19■□□□□ 0.82
Lhx3P50481 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lhx3P50481 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.19■□□□□ 0.82
Lhx3P50481 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lhx3P50481 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Lhx3P50481 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lhx3P50481 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Lhx3P50481 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lhx3P50481 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lhx3P50481 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lhx3P50481 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lhx3P50481 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Lhx3P50481 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lhx3P50481 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.18■□□□□ 0.82
Lhx3P50481 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lhx3P50481 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
Lhx3P50481 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
Lhx3P50481 Gm26833-201ENSMUST00000180899 440 ntBASIC20.17■□□□□ 0.82
Lhx3P50481 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.17■□□□□ 0.82
Lhx3P50481 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lhx3P50481 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lhx3P50481 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.16■□□□□ 0.82
Lhx3P50481 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Lhx3P50481 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.16■□□□□ 0.82
Lhx3P50481 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Lhx3P50481 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Lhx3P50481 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lhx3P50481 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lhx3P50481 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lhx3P50481 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Lhx3P50481 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Lhx3P50481 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lhx3P50481 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Lhx3P50481 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lhx3P50481 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lhx3P50481 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lhx3P50481 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lhx3P50481 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
Lhx3P50481 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Lhx3P50481 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Lhx3P50481 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lhx3P50481 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Lhx3P50481 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lhx3P50481 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lhx3P50481 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lhx3P50481 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lhx3P50481 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lhx3P50481 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.13■□□□□ 0.81
Lhx3P50481 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lhx3P50481 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Lhx3P50481 Gm40848-201ENSMUST00000221998 324 ntBASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 90.4 ms