Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shmt1P50431 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shmt1P50431 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.03■□□□□ 0.96
Shmt1P50431 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Shmt1P50431 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Shmt1P50431 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shmt1P50431 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.03■□□□□ 0.96
Shmt1P50431 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.03■□□□□ 0.96
Shmt1P50431 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shmt1P50431 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Shmt1P50431 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Shmt1P50431 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.03■□□□□ 0.96
Shmt1P50431 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Shmt1P50431 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Shmt1P50431 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Shmt1P50431 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Shmt1P50431 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Shmt1P50431 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Shmt1P50431 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Shmt1P50431 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.01■□□□□ 0.95
Shmt1P50431 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.01■□□□□ 0.95
Shmt1P50431 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.01■□□□□ 0.95
Shmt1P50431 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.01■□□□□ 0.95
Shmt1P50431 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Shmt1P50431 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shmt1P50431 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shmt1P50431 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shmt1P50431 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
Shmt1P50431 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Shmt1P50431 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shmt1P50431 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21■□□□□ 0.95
Shmt1P50431 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC21■□□□□ 0.95
Shmt1P50431 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shmt1P50431 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Shmt1P50431 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shmt1P50431 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shmt1P50431 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shmt1P50431 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Shmt1P50431 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
Shmt1P50431 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shmt1P50431 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.99■□□□□ 0.95
Shmt1P50431 Smad6-203ENSMUST00000179458 273 ntBASIC20.99■□□□□ 0.95
Shmt1P50431 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shmt1P50431 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Shmt1P50431 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Shmt1P50431 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
Shmt1P50431 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.98■□□□□ 0.95
Shmt1P50431 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Shmt1P50431 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.98■□□□□ 0.95
Shmt1P50431 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Shmt1P50431 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Shmt1P50431 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shmt1P50431 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Shmt1P50431 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.97■□□□□ 0.95
Shmt1P50431 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.97■□□□□ 0.95
Shmt1P50431 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Shmt1P50431 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shmt1P50431 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Shmt1P50431 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Shmt1P50431 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Shmt1P50431 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.97■□□□□ 0.95
Shmt1P50431 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shmt1P50431 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Shmt1P50431 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
Shmt1P50431 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Shmt1P50431 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Shmt1P50431 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Shmt1P50431 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shmt1P50431 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Shmt1P50431 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shmt1P50431 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shmt1P50431 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
Shmt1P50431 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.95■□□□□ 0.94
Shmt1P50431 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.95■□□□□ 0.94
Shmt1P50431 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shmt1P50431 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.95■□□□□ 0.94
Shmt1P50431 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shmt1P50431 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shmt1P50431 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shmt1P50431 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.94■□□□□ 0.94
Shmt1P50431 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms