Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msx1P13297 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msx1P13297 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.77■□□□□ 0.6
Msx1P13297 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Msx1P13297 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Msx1P13297 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Msx1P13297 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Msx1P13297 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msx1P13297 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msx1P13297 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
Msx1P13297 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.76■□□□□ 0.59
Msx1P13297 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Msx1P13297 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Msx1P13297 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Msx1P13297 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.75■□□□□ 0.59
Msx1P13297 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Gm43060-201ENSMUST00000200621 289 ntBASIC18.75■□□□□ 0.59
Msx1P13297 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Msx1P13297 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Msx1P13297 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msx1P13297 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Msx1P13297 Gm44487-201ENSMUST00000205145 325 ntBASIC18.74■□□□□ 0.59
Msx1P13297 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Msx1P13297 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Msx1P13297 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Msx1P13297 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Msx1P13297 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Msx1P13297 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Msx1P13297 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Msx1P13297 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Msx1P13297 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Msx1P13297 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.73■□□□□ 0.59
Msx1P13297 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Msx1P13297 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.73■□□□□ 0.59
Msx1P13297 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Msx1P13297 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Msx1P13297 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Msx1P13297 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Msx1P13297 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Msx1P13297 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Msx1P13297 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Msx1P13297 Gm10849-201ENSMUST00000100397 618 ntBASIC18.72■□□□□ 0.59
Msx1P13297 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.72■□□□□ 0.59
Msx1P13297 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.72■□□□□ 0.59
Msx1P13297 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.72■□□□□ 0.59
Msx1P13297 Hsf1-207ENSMUST00000228371 2102 ntBASIC18.72■□□□□ 0.59
Msx1P13297 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.72■□□□□ 0.59
Msx1P13297 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Msx1P13297 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Msx1P13297 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Msx1P13297 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Msx1P13297 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Gm42642-201ENSMUST00000200683 355 ntBASIC18.71■□□□□ 0.59
Msx1P13297 Spcs1-204ENSMUST00000226782 949 ntBASIC18.71■□□□□ 0.59
Msx1P13297 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.71■□□□□ 0.59
Msx1P13297 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.71■□□□□ 0.59
Msx1P13297 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Msx1P13297 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Msx1P13297 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Msx1P13297 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Msx1P13297 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Msx1P13297 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Msx1P13297 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Msx1P13297 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Msx1P13297 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC18.69■□□□□ 0.58
Msx1P13297 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Msx1P13297 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Msx1P13297 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Msx1P13297 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Msx1P13297 Gm27011-201ENSMUST00000182352 972 ntBASIC18.69■□□□□ 0.58
Msx1P13297 Gm37179-201ENSMUST00000194862 823 ntBASIC18.69■□□□□ 0.58
Msx1P13297 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Msx1P13297 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Msx1P13297 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Msx1P13297 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms