Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RaraP11416 Mir6236-201ENSMUST00000184437 123 ntBASIC21.47■■□□□ 1.03
RaraP11416 Gm5812-201ENSMUST00000061073 957 ntBASIC21.47■■□□□ 1.03
RaraP11416 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
RaraP11416 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
RaraP11416 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RaraP11416 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
RaraP11416 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.46■■□□□ 1.03
RaraP11416 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RaraP11416 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RaraP11416 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RaraP11416 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.46■■□□□ 1.03
RaraP11416 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.46■■□□□ 1.03
RaraP11416 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RaraP11416 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RaraP11416 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RaraP11416 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RaraP11416 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
RaraP11416 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RaraP11416 Gm7417-201ENSMUST00000192950 473 ntBASIC21.44■■□□□ 1.02
RaraP11416 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RaraP11416 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RaraP11416 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.44■■□□□ 1.02
RaraP11416 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RaraP11416 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
RaraP11416 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RaraP11416 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RaraP11416 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RaraP11416 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RaraP11416 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.43■■□□□ 1.02
RaraP11416 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RaraP11416 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
RaraP11416 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RaraP11416 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RaraP11416 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.43■■□□□ 1.02
RaraP11416 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RaraP11416 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
RaraP11416 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
RaraP11416 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RaraP11416 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RaraP11416 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.42■■□□□ 1.02
RaraP11416 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RaraP11416 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.42■■□□□ 1.02
RaraP11416 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RaraP11416 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RaraP11416 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RaraP11416 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RaraP11416 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RaraP11416 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RaraP11416 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Gm15546-201ENSMUST00000122095 826 ntBASIC21.4■■□□□ 1.02
RaraP11416 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.4■■□□□ 1.02
RaraP11416 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC21.4■■□□□ 1.02
RaraP11416 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.4■■□□□ 1.02
RaraP11416 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
RaraP11416 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RaraP11416 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21.4■■□□□ 1.02
RaraP11416 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RaraP11416 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.02
RaraP11416 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RaraP11416 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.39■■□□□ 1.01
RaraP11416 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RaraP11416 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RaraP11416 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
RaraP11416 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RaraP11416 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RaraP11416 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.38■■□□□ 1.01
RaraP11416 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.38■■□□□ 1.01
RaraP11416 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Etf1-202ENSMUST00000180351 108 ntBASIC21.38■■□□□ 1.01
RaraP11416 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RaraP11416 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms