Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm12527-201ENSMUST00000117967 564 ntBASIC23.55■■□□□ 1.36
Col1a1P11087 Gm13148-201ENSMUST00000118892 745 ntBASIC23.55■■□□□ 1.36
Col1a1P11087 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC23.55■■□□□ 1.36
Col1a1P11087 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Col1a1P11087 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Col1a1P11087 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Col1a1P11087 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
Col1a1P11087 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Col1a1P11087 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Col1a1P11087 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
Col1a1P11087 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Col1a1P11087 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC23.53■■□□□ 1.36
Col1a1P11087 Gm3807-201ENSMUST00000193520 1168 ntBASIC23.53■■□□□ 1.36
Col1a1P11087 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Col1a1P11087 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Col1a1P11087 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Col1a1P11087 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC23.52■■□□□ 1.36
Col1a1P11087 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Col1a1P11087 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Col1a1P11087 Gm22240-201ENSMUST00000175225 82 ntBASIC23.52■■□□□ 1.36
Col1a1P11087 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Col1a1P11087 Gm7290-201ENSMUST00000104990 617 ntBASIC23.51■■□□□ 1.35
Col1a1P11087 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC23.51■■□□□ 1.35
Col1a1P11087 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Col1a1P11087 Gm12918-201ENSMUST00000120234 636 ntBASIC23.51■■□□□ 1.35
Col1a1P11087 Gm15710-201ENSMUST00000121821 636 ntBASIC23.51■■□□□ 1.35
Col1a1P11087 Gm5075-201ENSMUST00000196916 622 ntBASIC23.51■■□□□ 1.35
Col1a1P11087 CT030146.1-201ENSMUST00000220919 217 ntBASIC23.51■■□□□ 1.35
Col1a1P11087 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC23.51■■□□□ 1.35
Col1a1P11087 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC23.51■■□□□ 1.35
Col1a1P11087 Gm26766-202ENSMUST00000227544 2347 ntBASIC23.51■■□□□ 1.35
Col1a1P11087 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC23.51■■□□□ 1.35
Col1a1P11087 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Col1a1P11087 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Col1a1P11087 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC23.5■■□□□ 1.35
Col1a1P11087 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC23.5■■□□□ 1.35
Col1a1P11087 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Col1a1P11087 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC23.5■■□□□ 1.35
Col1a1P11087 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Col1a1P11087 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Col1a1P11087 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC23.5■■□□□ 1.35
Col1a1P11087 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC23.5■■□□□ 1.35
Col1a1P11087 Gm8520-201ENSMUST00000186517 868 ntBASIC23.49■■□□□ 1.35
Col1a1P11087 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC23.49■■□□□ 1.35
Col1a1P11087 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
Col1a1P11087 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
Col1a1P11087 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC23.49■■□□□ 1.35
Col1a1P11087 CT010467.1-202ENSMUST00000205406 714 ntBASIC23.49■■□□□ 1.35
Col1a1P11087 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC23.49■■□□□ 1.35
Col1a1P11087 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Col1a1P11087 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Col1a1P11087 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Col1a1P11087 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Col1a1P11087 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Col1a1P11087 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Col1a1P11087 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC23.48■■□□□ 1.35
Col1a1P11087 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col1a1P11087 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col1a1P11087 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col1a1P11087 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col1a1P11087 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col1a1P11087 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Col1a1P11087 Gm43859-201ENSMUST00000200075 1412 ntBASIC23.47■■□□□ 1.35
Col1a1P11087 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC23.46■■□□□ 1.35
Col1a1P11087 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Col1a1P11087 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Col1a1P11087 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Col1a1P11087 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Col1a1P11087 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
Col1a1P11087 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC23.46■■□□□ 1.35
Col1a1P11087 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC23.45■■□□□ 1.35
Col1a1P11087 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Col1a1P11087 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Col1a1P11087 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC23.45■■□□□ 1.34
Col1a1P11087 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Col1a1P11087 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Col1a1P11087 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Col1a1P11087 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
Col1a1P11087 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Col1a1P11087 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Col1a1P11087 Gm5408-201ENSMUST00000197998 747 ntBASIC23.43■■□□□ 1.34
Col1a1P11087 Gm10252-201ENSMUST00000209541 832 ntBASIC23.43■■□□□ 1.34
Col1a1P11087 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
Col1a1P11087 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Col1a1P11087 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Col1a1P11087 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
Col1a1P11087 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Col1a1P11087 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
Col1a1P11087 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC23.43■■□□□ 1.34
Col1a1P11087 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
Col1a1P11087 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC23.43■■□□□ 1.34
Col1a1P11087 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC23.43■■□□□ 1.34
Col1a1P11087 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Col1a1P11087 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Col1a1P11087 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
Col1a1P11087 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Col1a1P11087 AC122428.2-201ENSMUST00000216321 1832 ntBASIC23.42■■□□□ 1.34
Col1a1P11087 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Col1a1P11087 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC23.42■■□□□ 1.34
Col1a1P11087 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC23.42■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms