Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21.48■■□□□ 1.03
Chmp6P0C0A3 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp6P0C0A3 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp6P0C0A3 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp6P0C0A3 Appbp2os-202ENSMUST00000206972 447 ntBASIC21.48■■□□□ 1.03
Chmp6P0C0A3 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp6P0C0A3 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp6P0C0A3 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp6P0C0A3 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp6P0C0A3 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp6P0C0A3 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp6P0C0A3 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp6P0C0A3 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.46■■□□□ 1.03
Chmp6P0C0A3 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Chmp6P0C0A3 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp6P0C0A3 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Chmp6P0C0A3 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Gm12821-201ENSMUST00000120022 600 ntBASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Chmp6P0C0A3 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp6P0C0A3 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC21.43■■□□□ 1.02
Chmp6P0C0A3 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp6P0C0A3 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Gm27454-201ENSMUST00000185090 204 ntBASIC21.42■■□□□ 1.02
Chmp6P0C0A3 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC21.42■■□□□ 1.02
Chmp6P0C0A3 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp6P0C0A3 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp6P0C0A3 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp6P0C0A3 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.41■■□□□ 1.02
Chmp6P0C0A3 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp6P0C0A3 Gm43137-201ENSMUST00000198052 594 ntBASIC21.41■■□□□ 1.02
Chmp6P0C0A3 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp6P0C0A3 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Chmp6P0C0A3 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Chmp6P0C0A3 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.4■■□□□ 1.02
Chmp6P0C0A3 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp6P0C0A3 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp6P0C0A3 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
Chmp6P0C0A3 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp6P0C0A3 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp6P0C0A3 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp6P0C0A3 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
Chmp6P0C0A3 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Chmp6P0C0A3 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Chmp6P0C0A3 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
Chmp6P0C0A3 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Chmp6P0C0A3 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
Chmp6P0C0A3 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.39■■□□□ 1.01
Chmp6P0C0A3 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Chmp6P0C0A3 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms