Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vti1aO89116 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vti1aO89116 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Vti1aO89116 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Vti1aO89116 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
Vti1aO89116 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vti1aO89116 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.35■■□□□ 1.01
Vti1aO89116 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Vti1aO89116 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.35■■□□□ 1.01
Vti1aO89116 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vti1aO89116 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vti1aO89116 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vti1aO89116 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vti1aO89116 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Vti1aO89116 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vti1aO89116 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Vti1aO89116 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.35■■□□□ 1.01
Vti1aO89116 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vti1aO89116 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vti1aO89116 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vti1aO89116 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
Vti1aO89116 Gm42569-201ENSMUST00000200539 472 ntBASIC21.34■■□□□ 1.01
Vti1aO89116 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vti1aO89116 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vti1aO89116 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vti1aO89116 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vti1aO89116 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Vti1aO89116 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vti1aO89116 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vti1aO89116 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.33■■□□□ 1.01
Vti1aO89116 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.33■■□□□ 1.01
Vti1aO89116 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vti1aO89116 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.33■■□□□ 1.01
Vti1aO89116 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vti1aO89116 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.33■■□□□ 1.01
Vti1aO89116 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Vti1aO89116 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC21.33■■□□□ 1
Vti1aO89116 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.33■■□□□ 1
Vti1aO89116 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.32■■□□□ 1
Vti1aO89116 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vti1aO89116 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Vti1aO89116 Gm7291-201ENSMUST00000199147 382 ntBASIC21.32■■□□□ 1
Vti1aO89116 Gm42642-201ENSMUST00000200683 355 ntBASIC21.32■■□□□ 1
Vti1aO89116 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC21.32■■□□□ 1
Vti1aO89116 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.32■■□□□ 1
Vti1aO89116 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.32■■□□□ 1
Vti1aO89116 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Vti1aO89116 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vti1aO89116 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.32■■□□□ 1
Vti1aO89116 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vti1aO89116 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.32■■□□□ 1
Vti1aO89116 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vti1aO89116 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.32■■□□□ 1
Vti1aO89116 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vti1aO89116 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vti1aO89116 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vti1aO89116 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.31■■□□□ 1
Vti1aO89116 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.31■■□□□ 1
Vti1aO89116 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
Vti1aO89116 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.31■■□□□ 1
Vti1aO89116 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Vti1aO89116 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Vti1aO89116 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Vti1aO89116 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vti1aO89116 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Vti1aO89116 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vti1aO89116 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.3■■□□□ 1
Vti1aO89116 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.3■■□□□ 1
Vti1aO89116 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vti1aO89116 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.29■■□□□ 1
Vti1aO89116 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.29■■□□□ 1
Vti1aO89116 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vti1aO89116 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.29■■□□□ 1
Vti1aO89116 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.29■■□□□ 1
Vti1aO89116 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.29■■□□□ 1
Vti1aO89116 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.29■■□□□ 1
Vti1aO89116 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vti1aO89116 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vti1aO89116 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Vti1aO89116 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vti1aO89116 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Vti1aO89116 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC21.28■■□□□ 1
Vti1aO89116 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.28■■□□□ 1
Vti1aO89116 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Vti1aO89116 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.28■■□□□ 1
Vti1aO89116 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Vti1aO89116 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vti1aO89116 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Vti1aO89116 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vti1aO89116 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Vti1aO89116 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.27■■□□□ 1
Vti1aO89116 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vti1aO89116 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vti1aO89116 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vti1aO89116 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.27■■□□□ 1
Vti1aO89116 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Vti1aO89116 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Vti1aO89116 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Vti1aO89116 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Vti1aO89116 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms