Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Pcdha4O88689 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC22.23■■□□□ 1.15
Pcdha4O88689 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Pcdha4O88689 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Pcdha4O88689 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Pcdha4O88689 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC22.22■■□□□ 1.15
Pcdha4O88689 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Pcdha4O88689 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Pcdha4O88689 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Pcdha4O88689 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdha4O88689 Gm15043-201ENSMUST00000118843 1543 ntBASIC22.21■■□□□ 1.15
Pcdha4O88689 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC22.21■■□□□ 1.15
Pcdha4O88689 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdha4O88689 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdha4O88689 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdha4O88689 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Pcdha4O88689 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Pcdha4O88689 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdha4O88689 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC22.21■■□□□ 1.15
Pcdha4O88689 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdha4O88689 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC22.2■■□□□ 1.14
Pcdha4O88689 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdha4O88689 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC22.2■■□□□ 1.14
Pcdha4O88689 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC22.2■■□□□ 1.14
Pcdha4O88689 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdha4O88689 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdha4O88689 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Pcdha4O88689 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdha4O88689 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdha4O88689 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Pcdha4O88689 Hsf1-207ENSMUST00000228371 2102 ntBASIC22.19■■□□□ 1.14
Pcdha4O88689 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdha4O88689 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC22.19■■□□□ 1.14
Pcdha4O88689 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Pcdha4O88689 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdha4O88689 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdha4O88689 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Pcdha4O88689 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Pcdha4O88689 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC22.18■■□□□ 1.14
Pcdha4O88689 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
Pcdha4O88689 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdha4O88689 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC22.17■■□□□ 1.14
Pcdha4O88689 Gm43017-201ENSMUST00000198296 752 ntBASIC22.17■■□□□ 1.14
Pcdha4O88689 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdha4O88689 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdha4O88689 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Pcdha4O88689 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
Pcdha4O88689 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Pcdha4O88689 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdha4O88689 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdha4O88689 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC22.15■■□□□ 1.14
Pcdha4O88689 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC22.15■■□□□ 1.14
Pcdha4O88689 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdha4O88689 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdha4O88689 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdha4O88689 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC22.15■■□□□ 1.14
Pcdha4O88689 Cdkn3-203ENSMUST00000227149 1952 ntBASIC22.15■■□□□ 1.14
Pcdha4O88689 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdha4O88689 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdha4O88689 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdha4O88689 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdha4O88689 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdha4O88689 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdha4O88689 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdha4O88689 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC22.14■■□□□ 1.13
Pcdha4O88689 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdha4O88689 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdha4O88689 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdha4O88689 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdha4O88689 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdha4O88689 Gm43909-201ENSMUST00000203443 1876 ntBASIC22.13■■□□□ 1.13
Pcdha4O88689 Smad6-203ENSMUST00000179458 273 ntBASIC22.13■■□□□ 1.13
Pcdha4O88689 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha4O88689 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC22.13■■□□□ 1.13
Pcdha4O88689 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha4O88689 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha4O88689 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdha4O88689 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms