Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col5a1O88207 Gm27801-201ENSMUST00000184174 223 ntBASIC18.19■□□□□ 0.5
Col5a1O88207 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col5a1O88207 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col5a1O88207 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col5a1O88207 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col5a1O88207 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col5a1O88207 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Col5a1O88207 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col5a1O88207 Gm20760-201ENSMUST00000179197 648 ntBASIC18.19■□□□□ 0.5
Col5a1O88207 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.19■□□□□ 0.5
Col5a1O88207 Gm4968-201ENSMUST00000071458 858 ntBASIC18.19■□□□□ 0.5
Col5a1O88207 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.18■□□□□ 0.5
Col5a1O88207 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col5a1O88207 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.18■□□□□ 0.5
Col5a1O88207 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col5a1O88207 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.18■□□□□ 0.5
Col5a1O88207 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.18■□□□□ 0.5
Col5a1O88207 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.18■□□□□ 0.5
Col5a1O88207 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col5a1O88207 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col5a1O88207 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.17■□□□□ 0.5
Col5a1O88207 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.17■□□□□ 0.5
Col5a1O88207 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.17■□□□□ 0.5
Col5a1O88207 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col5a1O88207 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col5a1O88207 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col5a1O88207 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col5a1O88207 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col5a1O88207 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col5a1O88207 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Col5a1O88207 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Col5a1O88207 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Col5a1O88207 Gm7977-201ENSMUST00000193787 748 ntBASIC18.16■□□□□ 0.5
Col5a1O88207 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col5a1O88207 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Col5a1O88207 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.16■□□□□ 0.5
Col5a1O88207 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.16■□□□□ 0.5
Col5a1O88207 AC130671.1-201ENSMUST00000227384 1237 ntBASIC18.16■□□□□ 0.5
Col5a1O88207 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
Col5a1O88207 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col5a1O88207 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col5a1O88207 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col5a1O88207 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col5a1O88207 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col5a1O88207 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.15■□□□□ 0.5
Col5a1O88207 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col5a1O88207 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col5a1O88207 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col5a1O88207 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.15■□□□□ 0.5
Col5a1O88207 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.14■□□□□ 0.5
Col5a1O88207 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col5a1O88207 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
Col5a1O88207 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Col5a1O88207 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col5a1O88207 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.14■□□□□ 0.49
Col5a1O88207 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Col5a1O88207 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Col5a1O88207 Gm12527-201ENSMUST00000117967 564 ntBASIC18.14■□□□□ 0.49
Col5a1O88207 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Col5a1O88207 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
Col5a1O88207 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col5a1O88207 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.13■□□□□ 0.49
Col5a1O88207 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col5a1O88207 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col5a1O88207 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col5a1O88207 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
Col5a1O88207 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Col5a1O88207 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.13■□□□□ 0.49
Col5a1O88207 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.13■□□□□ 0.49
Col5a1O88207 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col5a1O88207 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col5a1O88207 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.12■□□□□ 0.49
Col5a1O88207 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Col5a1O88207 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col5a1O88207 Gm43006-201ENSMUST00000197702 1602 ntBASIC18.12■□□□□ 0.49
Col5a1O88207 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col5a1O88207 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col5a1O88207 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col5a1O88207 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Col5a1O88207 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col5a1O88207 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC18.12■□□□□ 0.49
Col5a1O88207 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.12■□□□□ 0.49
Col5a1O88207 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col5a1O88207 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col5a1O88207 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col5a1O88207 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col5a1O88207 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col5a1O88207 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms