Protein–RNA interactions for Protein: O35454

Clcn6, Chloride transport protein 6, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn6O35454 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clcn6O35454 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
Clcn6O35454 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clcn6O35454 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Clcn6O35454 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.75■□□□□ 0.91
Clcn6O35454 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC20.75■□□□□ 0.91
Clcn6O35454 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.75■□□□□ 0.91
Clcn6O35454 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clcn6O35454 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.74■□□□□ 0.91
Clcn6O35454 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.74■□□□□ 0.91
Clcn6O35454 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20.74■□□□□ 0.91
Clcn6O35454 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Gm10620-201ENSMUST00000098379 1332 ntBASIC20.74■□□□□ 0.91
Clcn6O35454 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clcn6O35454 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Clcn6O35454 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clcn6O35454 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clcn6O35454 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC20.73■□□□□ 0.91
Clcn6O35454 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clcn6O35454 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clcn6O35454 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clcn6O35454 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.73■□□□□ 0.91
Clcn6O35454 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Clcn6O35454 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clcn6O35454 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.72■□□□□ 0.91
Clcn6O35454 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Clcn6O35454 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Clcn6O35454 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
Clcn6O35454 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clcn6O35454 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clcn6O35454 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clcn6O35454 Gm14913-201ENSMUST00000120011 1093 ntBASIC20.71■□□□□ 0.91
Clcn6O35454 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.71■□□□□ 0.91
Clcn6O35454 AC102523.2-201ENSMUST00000227813 983 ntBASIC20.71■□□□□ 0.91
Clcn6O35454 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.71■□□□□ 0.91
Clcn6O35454 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.71■□□□□ 0.91
Clcn6O35454 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clcn6O35454 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clcn6O35454 Gm37965-201ENSMUST00000195304 1362 ntBASIC20.71■□□□□ 0.91
Clcn6O35454 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
Clcn6O35454 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Clcn6O35454 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.7■□□□□ 0.9
Clcn6O35454 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clcn6O35454 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clcn6O35454 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Clcn6O35454 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Clcn6O35454 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Clcn6O35454 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clcn6O35454 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Clcn6O35454 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.69■□□□□ 0.9
Clcn6O35454 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Clcn6O35454 Gm28877-201ENSMUST00000191349 604 ntBASIC20.69■□□□□ 0.9
Clcn6O35454 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.69■□□□□ 0.9
Clcn6O35454 Gm45102-201ENSMUST00000207427 857 ntBASIC20.69■□□□□ 0.9
Clcn6O35454 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC20.69■□□□□ 0.9
Clcn6O35454 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clcn6O35454 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Clcn6O35454 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clcn6O35454 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clcn6O35454 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clcn6O35454 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clcn6O35454 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clcn6O35454 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clcn6O35454 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clcn6O35454 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Clcn6O35454 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Clcn6O35454 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.67■□□□□ 0.9
Clcn6O35454 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC20.67■□□□□ 0.9
Clcn6O35454 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms