Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Pcdh1F7BJK1 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdh1F7BJK1 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdh1F7BJK1 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdh1F7BJK1 Gm13238-201ENSMUST00000117655 780 ntBASIC17.84■□□□□ 0.45
Pcdh1F7BJK1 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC17.84■□□□□ 0.45
Pcdh1F7BJK1 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Pcdh1F7BJK1 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Pcdh1F7BJK1 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Pcdh1F7BJK1 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
Pcdh1F7BJK1 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Pcdh1F7BJK1 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Pcdh1F7BJK1 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Pcdh1F7BJK1 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.83■□□□□ 0.45
Pcdh1F7BJK1 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
Pcdh1F7BJK1 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Gm7143-201ENSMUST00000222811 859 ntBASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pcdh1F7BJK1 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdh1F7BJK1 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdh1F7BJK1 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdh1F7BJK1 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdh1F7BJK1 Gm43566-201ENSMUST00000196851 808 ntBASIC17.82■□□□□ 0.44
Pcdh1F7BJK1 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdh1F7BJK1 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdh1F7BJK1 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pcdh1F7BJK1 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pcdh1F7BJK1 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdh1F7BJK1 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdh1F7BJK1 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdh1F7BJK1 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdh1F7BJK1 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC17.8■□□□□ 0.44
Pcdh1F7BJK1 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pcdh1F7BJK1 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Pcdh1F7BJK1 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
Pcdh1F7BJK1 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdh1F7BJK1 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdh1F7BJK1 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdh1F7BJK1 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdh1F7BJK1 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdh1F7BJK1 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdh1F7BJK1 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdh1F7BJK1 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdh1F7BJK1 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdh1F7BJK1 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdh1F7BJK1 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdh1F7BJK1 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdh1F7BJK1 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdh1F7BJK1 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdh1F7BJK1 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.77■□□□□ 0.43
Pcdh1F7BJK1 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Pcdh1F7BJK1 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdh1F7BJK1 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdh1F7BJK1 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdh1F7BJK1 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC17.75■□□□□ 0.43
Pcdh1F7BJK1 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.75■□□□□ 0.43
Pcdh1F7BJK1 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdh1F7BJK1 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 80 ms