Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm5874-201ENSMUST00000096101 508 ntBASIC19.54■□□□□ 0.72
Chd3B1AR17 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chd3B1AR17 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Chd3B1AR17 Gm10033-202ENSMUST00000211874 928 ntBASIC19.53■□□□□ 0.72
Chd3B1AR17 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
Chd3B1AR17 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chd3B1AR17 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chd3B1AR17 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC19.53■□□□□ 0.72
Chd3B1AR17 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chd3B1AR17 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chd3B1AR17 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.53■□□□□ 0.72
Chd3B1AR17 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chd3B1AR17 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chd3B1AR17 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Chd3B1AR17 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Chd3B1AR17 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Chd3B1AR17 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Chd3B1AR17 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Chd3B1AR17 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Chd3B1AR17 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.52■□□□□ 0.71
Chd3B1AR17 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.52■□□□□ 0.71
Chd3B1AR17 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.52■□□□□ 0.71
Chd3B1AR17 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.52■□□□□ 0.71
Chd3B1AR17 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Chd3B1AR17 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Chd3B1AR17 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Chd3B1AR17 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.51■□□□□ 0.71
Chd3B1AR17 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Chd3B1AR17 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Chd3B1AR17 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC19.5■□□□□ 0.71
Chd3B1AR17 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.5■□□□□ 0.71
Chd3B1AR17 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Chd3B1AR17 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.5■□□□□ 0.71
Chd3B1AR17 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Chd3B1AR17 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Chd3B1AR17 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Chd3B1AR17 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Chd3B1AR17 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Chd3B1AR17 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Chd3B1AR17 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Chd3B1AR17 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Chd3B1AR17 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Chd3B1AR17 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.49■□□□□ 0.71
Chd3B1AR17 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Chd3B1AR17 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Chd3B1AR17 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Chd3B1AR17 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Chd3B1AR17 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Chd3B1AR17 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Chd3B1AR17 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Chd3B1AR17 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Chd3B1AR17 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Chd3B1AR17 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Chd3B1AR17 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Chd3B1AR17 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Chd3B1AR17 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.47■□□□□ 0.71
Chd3B1AR17 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Chd3B1AR17 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Chd3B1AR17 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Chd3B1AR17 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Chd3B1AR17 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Chd3B1AR17 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Chd3B1AR17 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Chd3B1AR17 Gm8495-201ENSMUST00000188740 694 ntBASIC19.46■□□□□ 0.71
Chd3B1AR17 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Chd3B1AR17 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Chd3B1AR17 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Chd3B1AR17 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Chd3B1AR17 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Chd3B1AR17 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Chd3B1AR17 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Chd3B1AR17 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Chd3B1AR17 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Chd3B1AR17 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.45■□□□□ 0.7
Chd3B1AR17 Gm10849-201ENSMUST00000100397 618 ntBASIC19.45■□□□□ 0.7
Chd3B1AR17 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.45■□□□□ 0.7
Chd3B1AR17 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC19.45■□□□□ 0.7
Chd3B1AR17 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Chd3B1AR17 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Chd3B1AR17 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Chd3B1AR17 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Chd3B1AR17 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Chd3B1AR17 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.44■□□□□ 0.7
Chd3B1AR17 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC19.44■□□□□ 0.7
Chd3B1AR17 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Chd3B1AR17 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Chd3B1AR17 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Chd3B1AR17 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Chd3B1AR17 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms