Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col6a5A6H584 Gm7367-201ENSMUST00000057611 492 ntBASIC15.27■□□□□ 0.03
Col6a5A6H584 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Col6a5A6H584 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC15.26■□□□□ 0.03
Col6a5A6H584 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a5A6H584 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a5A6H584 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a5A6H584 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a5A6H584 Gm18101-201ENSMUST00000215769 548 ntBASIC15.26■□□□□ 0.03
Col6a5A6H584 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col6a5A6H584 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a5A6H584 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC15.26■□□□□ 0.03
Col6a5A6H584 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC15.26■□□□□ 0.03
Col6a5A6H584 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a5A6H584 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a5A6H584 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a5A6H584 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a5A6H584 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a5A6H584 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a5A6H584 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
Col6a5A6H584 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC15.25■□□□□ 0.03
Col6a5A6H584 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a5A6H584 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a5A6H584 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a5A6H584 AC115037.1-201ENSMUST00000223391 2173 ntBASIC15.24■□□□□ 0.03
Col6a5A6H584 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a5A6H584 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a5A6H584 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a5A6H584 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col6a5A6H584 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a5A6H584 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a5A6H584 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col6a5A6H584 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a5A6H584 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a5A6H584 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a5A6H584 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Col6a5A6H584 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a5A6H584 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a5A6H584 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a5A6H584 Gm13146-201ENSMUST00000118508 780 ntBASIC15.23■□□□□ 0.03
Col6a5A6H584 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC15.23■□□□□ 0.03
Col6a5A6H584 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a5A6H584 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a5A6H584 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a5A6H584 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC15.23■□□□□ 0.03
Col6a5A6H584 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC15.23■□□□□ 0.03
Col6a5A6H584 Gm44672-201ENSMUST00000206944 1098 ntBASIC15.23■□□□□ 0.03
Col6a5A6H584 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a5A6H584 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a5A6H584 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a5A6H584 Dio3-201ENSMUST00000097228 1449 ntBASIC15.21■□□□□ 0.03
Col6a5A6H584 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a5A6H584 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a5A6H584 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a5A6H584 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC15.21■□□□□ 0.03
Col6a5A6H584 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a5A6H584 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a5A6H584 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
Col6a5A6H584 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a5A6H584 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Col6a5A6H584 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a5A6H584 Gm11249-201ENSMUST00000117071 859 ntBASIC15.21■□□□□ 0.03
Col6a5A6H584 Gm6433-201ENSMUST00000118634 875 ntBASIC15.21■□□□□ 0.03
Col6a5A6H584 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC15.21■□□□□ 0.03
Col6a5A6H584 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC15.21■□□□□ 0.03
Col6a5A6H584 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a5A6H584 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Col6a5A6H584 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a5A6H584 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a5A6H584 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a5A6H584 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Col6a5A6H584 Gm6420-201ENSMUST00000193885 723 ntBASIC15.2■□□□□ 0.02
Col6a5A6H584 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a5A6H584 Gm37563-201ENSMUST00000192580 1513 ntBASIC15.2■□□□□ 0.02
Col6a5A6H584 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a5A6H584 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Col6a5A6H584 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC15.2■□□□□ 0.02
Col6a5A6H584 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a5A6H584 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a5A6H584 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Col6a5A6H584 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a5A6H584 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col6a5A6H584 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Col6a5A6H584 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col6a5A6H584 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col6a5A6H584 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col6a5A6H584 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col6a5A6H584 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col6a5A6H584 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC15.19■□□□□ 0.02
Col6a5A6H584 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
Col6a5A6H584 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.19■□□□□ 0.02
Col6a5A6H584 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Col6a5A6H584 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col6a5A6H584 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col6a5A6H584 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.19■□□□□ 0.02
Col6a5A6H584 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col6a5A6H584 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Col6a5A6H584 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
Col6a5A6H584 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Col6a5A6H584 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms