Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Clasp1-206ENSMUST00000186349 7281 ntAPPRIS ALT2 TSL 5 BASIC8.54□□□□□ -1.04
Hmgb3O54879 Pabpc5-201ENSMUST00000040961 2434 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Xrcc6-201ENSMUST00000069530 2114 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Synj2-207ENSMUST00000115788 3498 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Zfp568-204ENSMUST00000177931 2013 ntAPPRIS ALT2 TSL 5 BASIC8.54□□□□□ -1.04
Hmgb3O54879 Mfsd11-201ENSMUST00000021173 3298 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Gm26809-201ENSMUST00000180863 2981 ntTSL 5 BASIC8.54□□□□□ -1.04
Hmgb3O54879 Eci2-201ENSMUST00000021854 1746 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Wdcp-201ENSMUST00000053034 2892 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Sbf2-205ENSMUST00000164759 7090 ntAPPRIS ALT2 TSL 5 BASIC8.54□□□□□ -1.04
Hmgb3O54879 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Xlr3a-201ENSMUST00000074619 1645 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Hipk1-203ENSMUST00000118317 7939 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hmgb3O54879 Actn2-203ENSMUST00000168193 2920 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Cd177-201ENSMUST00000063956 2714 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Phf8-206ENSMUST00000112670 3484 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Nalcn-201ENSMUST00000000201 7122 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Bzw2-201ENSMUST00000020856 1871 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Ptch1-202ENSMUST00000192155 7002 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Iqgap3-204ENSMUST00000194440 3263 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Stoml3-201ENSMUST00000029307 1780 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Sdhc-202ENSMUST00000111336 3171 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm45767-201ENSMUST00000212778 4561 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Dnah17-204ENSMUST00000132685 13612 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Inpp4b-212ENSMUST00000215332 5486 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Zbtb8b-202ENSMUST00000106046 3323 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Zadh2-201ENSMUST00000060223 3321 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Wipf3-206ENSMUST00000172046 4204 ntAPPRIS P4 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Pear1-216ENSMUST00000174759 3554 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Adgrl3-213ENSMUST00000120292 5026 ntTSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm16429-202ENSMUST00000201400 1848 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm7971-201ENSMUST00000086950 1848 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Ccnc-202ENSMUST00000102997 3365 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm16518-201ENSMUST00000117960 508 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm14208-201ENSMUST00000119645 678 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm16219-201ENSMUST00000120096 274 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Scfd2-208ENSMUST00000151474 3834 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Park2-203ENSMUST00000168593 735 ntTSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm29543-201ENSMUST00000188138 967 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm37259-201ENSMUST00000193903 849 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm43852-201ENSMUST00000202098 917 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 AC159103.1-201ENSMUST00000228325 429 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm42741-201ENSMUST00000201340 2278 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Plekhb2-201ENSMUST00000027297 3279 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Smyd3-204ENSMUST00000128302 6871 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Spocd1-201ENSMUST00000084263 3096 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Ctage5-201ENSMUST00000021384 1628 ntAPPRIS P2 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 5730419F03Rik-201ENSMUST00000190504 2092 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Pax5-201ENSMUST00000014174 8004 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm37302-201ENSMUST00000192958 2998 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Ufl1-202ENSMUST00000102994 4316 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Arhgef9-204ENSMUST00000113882 2445 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Pla2g5-203ENSMUST00000102512 1976 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Aoc3-202ENSMUST00000103105 4397 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Il6st-210ENSMUST00000184949 2571 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 Casr-201ENSMUST00000063597 4534 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Osbpl5-201ENSMUST00000020411 3994 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Dis3l2-202ENSMUST00000168237 3154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Tdp1-207ENSMUST00000153627 2036 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hmgb3O54879 Olfr463-202ENSMUST00000215150 2031 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
Hmgb3O54879 AC154352.1-201ENSMUST00000221477 2365 ntBASIC8.53□□□□□ -1.04
Hmgb3O54879 Btn1a1-201ENSMUST00000041674 3423 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
Hmgb3O54879 R3hcc1l-201ENSMUST00000026188 4112 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.04
Hmgb3O54879 Clip1-201ENSMUST00000031382 4387 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.04
Hmgb3O54879 Ints10-204ENSMUST00000110242 4250 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
Hmgb3O54879 Slfn3-201ENSMUST00000019130 1816 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.04
Hmgb3O54879 Gm43112-201ENSMUST00000196665 3122 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Cr1l-204ENSMUST00000193094 2776 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Sh2d7-201ENSMUST00000060242 2759 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Zfp74-204ENSMUST00000108212 2060 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Tbc1d24-207ENSMUST00000171189 4592 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gfm2-208ENSMUST00000161639 3157 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Smoc1-201ENSMUST00000021564 3439 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Rabgef1-201ENSMUST00000026390 2828 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 AC160562.2-201ENSMUST00000216374 2201 ntTSL 2 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Bcl2l1-206ENSMUST00000140436 1865 ntTSL 2 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Adig-202ENSMUST00000109484 488 ntTSL 2 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm12419-201ENSMUST00000116649 636 ntBASIC8.52□□□□□ -1.05
Retrieved 100 of 76,532 protein–RNA pairs in 77.4 ms