Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Olfr225-201ENSMUST00000055276 1260 ntAPPRIS ALT2 BASIC8.59□□□□□ -1.03
Hmgb3O54879 Gm25857-201ENSMUST00000082788 129 ntBASIC8.59□□□□□ -1.03
Hmgb3O54879 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
Hmgb3O54879 Vmn1r90-203ENSMUST00000226510 6674 ntAPPRIS ALT2 BASIC8.59□□□□□ -1.03
Hmgb3O54879 Gm13104-201ENSMUST00000119651 1446 ntBASIC8.59□□□□□ -1.03
Hmgb3O54879 Gm12097-201ENSMUST00000121523 1414 ntBASIC8.59□□□□□ -1.03
Hmgb3O54879 Padi3-202ENSMUST00000172098 3310 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 AC165148.1-201ENSMUST00000224795 2372 ntBASIC8.59□□□□□ -1.03
Hmgb3O54879 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
Hmgb3O54879 Rbbp4-201ENSMUST00000102598 4407 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 4933427D14Rik-202ENSMUST00000108506 4732 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Lsm6-203ENSMUST00000130325 3792 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Fut10-204ENSMUST00000161788 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Gm12059-201ENSMUST00000128996 3105 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Zfp871-202ENSMUST00000159086 5111 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Homer1-204ENSMUST00000102752 5713 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Adam22-206ENSMUST00000115386 9056 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
Hmgb3O54879 Ptprc-207ENSMUST00000183301 5074 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
Hmgb3O54879 Tcf4-207ENSMUST00000114985 8577 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Gm6903-201ENSMUST00000160509 1366 ntBASIC8.59□□□□□ -1.03
Hmgb3O54879 Pde9a-206ENSMUST00000134525 1818 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
Hmgb3O54879 Gm13437-201ENSMUST00000122434 1981 ntBASIC8.59□□□□□ -1.03
Hmgb3O54879 Cacna1f-202ENSMUST00000115726 6079 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 2210010C04Rik-201ENSMUST00000031931 2142 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
Hmgb3O54879 Dubr-202ENSMUST00000186535 2896 ntTSL 1 (best) BASIC8.59□□□□□ -1.04
Hmgb3O54879 Capn3-202ENSMUST00000028749 3174 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.04
Hmgb3O54879 Stk36-202ENSMUST00000087186 4065 ntTSL 1 (best) BASIC8.59□□□□□ -1.04
Hmgb3O54879 Nfatc1-203ENSMUST00000167977 4604 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Glt1d1-201ENSMUST00000118139 3413 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Olfr287-204ENSMUST00000170618 1776 ntAPPRIS P1 TSL 2 BASIC8.58□□□□□ -1.04
Hmgb3O54879 3000002C10Rik-201ENSMUST00000125451 1614 ntTSL 2 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm45397-201ENSMUST00000209816 1600 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Lpar2-201ENSMUST00000034325 5701 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm26704-201ENSMUST00000181362 2901 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Adra1a-205ENSMUST00000161339 2788 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm26668-201ENSMUST00000181125 3635 ntTSL 5 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Vmn1r181-205ENSMUST00000228399 4616 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Stk11ip-201ENSMUST00000027414 4458 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm42031-201ENSMUST00000209823 1885 ntTSL 5 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Slc10a1-202ENSMUST00000218162 1749 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Nucb1-210ENSMUST00000211765 4853 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Slc25a44-201ENSMUST00000057935 3577 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Mid1-202ENSMUST00000078947 3591 ntTSL 5 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Spert-201ENSMUST00000035243 1430 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Celf4-202ENSMUST00000115816 3995 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm15595-201ENSMUST00000120840 961 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Snord55-201ENSMUST00000174939 79 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm27320-201ENSMUST00000184892 109 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm9540-201ENSMUST00000188230 478 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Platr10-202ENSMUST00000191479 818 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm43186-201ENSMUST00000198130 824 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm5869-201ENSMUST00000200248 1257 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm43822-201ENSMUST00000200285 476 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm6082-201ENSMUST00000215204 454 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Ntng1-201ENSMUST00000051253 327 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Olfr584-201ENSMUST00000098210 964 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Zfp111-203ENSMUST00000086006 6402 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Igf2bp3-201ENSMUST00000031838 4345 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Nupl1-201ENSMUST00000225805 3602 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Sfi1-203ENSMUST00000101655 3888 ntAPPRIS ALT2 TSL 5 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Pde6a-201ENSMUST00000025468 4421 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Disp1-202ENSMUST00000171366 4687 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Gm18222-201ENSMUST00000202416 1387 ntBASIC8.58□□□□□ -1.04
Hmgb3O54879 Cdk20-201ENSMUST00000021939 4118 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Cd200r2-201ENSMUST00000102805 1750 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Fam171a1-202ENSMUST00000072955 3364 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Hmgb3O54879 Ptprj-201ENSMUST00000111493 7124 ntAPPRIS ALT2 TSL 5 BASIC8.58□□□□□ -1.04
Hmgb3O54879 Krba1-208ENSMUST00000203371 4000 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm42815-201ENSMUST00000198787 1470 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Sept6-202ENSMUST00000060474 3457 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Tigd4-201ENSMUST00000062623 3459 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Ccnc-201ENSMUST00000065928 3484 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Rnft1-201ENSMUST00000020827 4452 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 4833418N02Rik-201ENSMUST00000137539 1820 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm44926-201ENSMUST00000207898 1826 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Pik3cg-207ENSMUST00000220366 4660 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Slc2a4rg-ps-201ENSMUST00000127559 2976 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Pigq-202ENSMUST00000097368 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Cep95-202ENSMUST00000103068 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Atg14-201ENSMUST00000042988 3450 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 R3hdm2-205ENSMUST00000105251 3739 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
Retrieved 100 of 76,532 protein–RNA pairs in 87.3 ms