Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm10020-201ENSMUST00000081993 612 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm25580-201ENSMUST00000083409 327 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 4631405J19Rik-201ENSMUST00000099699 1225 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Cadm2-201ENSMUST00000114292 9564 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Adcy7-202ENSMUST00000168545 5937 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm37057-201ENSMUST00000192624 1916 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Kif3c-201ENSMUST00000020999 6791 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Stat5a-201ENSMUST00000004145 3888 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Lig4-201ENSMUST00000095476 5028 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Slc6a5-203ENSMUST00000207753 6966 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Cct8l1-201ENSMUST00000045016 1961 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Rab27a-201ENSMUST00000034722 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Rnf6-206ENSMUST00000161859 3452 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Spen-202ENSMUST00000105786 12299 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Dip2c-202ENSMUST00000169960 4801 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 AL645745.1-201ENSMUST00000222202 5348 ntTSL 2 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Fut10-201ENSMUST00000066173 3183 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Idua-202ENSMUST00000112563 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Spata16-201ENSMUST00000047005 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Epb41l5-202ENSMUST00000052404 6442 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Pcdhb9-201ENSMUST00000057228 3055 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Ncam1-201ENSMUST00000114476 2567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Rasal1-205ENSMUST00000156722 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Cep112-201ENSMUST00000061287 3485 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Trim36-202ENSMUST00000167364 4543 ntTSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm10643-201ENSMUST00000098592 1577 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Amph-201ENSMUST00000003345 3367 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Pou2f1-204ENSMUST00000111426 2671 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Stox2-206ENSMUST00000210030 2734 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Exoc7-203ENSMUST00000106413 3298 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm13039-201ENSMUST00000118638 794 ntBASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Syngr4-202ENSMUST00000120299 722 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm5529-201ENSMUST00000165691 891 ntBASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm29431-201ENSMUST00000189848 449 ntTSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm39397-201ENSMUST00000212331 228 ntTSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 AC122891.1-201ENSMUST00000218671 268 ntBASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm21115-201ENSMUST00000187565 2578 ntBASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Nav2-204ENSMUST00000183659 7765 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Pomgnt1-204ENSMUST00000120083 2953 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Trak2-201ENSMUST00000027186 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm43482-201ENSMUST00000202797 1861 ntBASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Dopey2-201ENSMUST00000045004 7319 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Gm37003-201ENSMUST00000194702 2827 ntBASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Piwil1-202ENSMUST00000195959 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Acot11-202ENSMUST00000102762 5689 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Mfsd2b-201ENSMUST00000045921 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Zdbf2-201ENSMUST00000029025 12112 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Mre11a-201ENSMUST00000034405 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 AC131029.1-201ENSMUST00000226391 2929 ntBASIC11.8□□□□□ -0.52
Smc1aQ9CU62 Prox1-203ENSMUST00000177288 3144 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Smc1aQ9CU62 AC121574.1-201ENSMUST00000228770 3132 ntBASIC11.8□□□□□ -0.52
Smc1aQ9CU62 D630003M21Rik-202ENSMUST00000103121 4521 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Polh-201ENSMUST00000024749 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Dchs1-201ENSMUST00000078482 10754 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Cdkal1-202ENSMUST00000091674 2427 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Rps24-210ENSMUST00000225023 1613 ntAPPRIS P4 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 C130021I20Rik-201ENSMUST00000147294 3693 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Zfp512-201ENSMUST00000076264 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Pxdn-208ENSMUST00000220271 6377 ntTSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Atg16l2-201ENSMUST00000120267 6459 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Prdm16-205ENSMUST00000105637 8595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Prdm16-201ENSMUST00000030902 8598 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Il33-202ENSMUST00000120388 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms