Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm44420-201ENSMUST00000203669 490 ntBASIC12.25□□□□□ -0.45
Traf1P39428 AC153379.1-201ENSMUST00000218174 485 ntTSL 3 BASIC12.25□□□□□ -0.45
Traf1P39428 Gimap7-201ENSMUST00000052503 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Gm17836-201ENSMUST00000191976 1302 ntBASIC12.25□□□□□ -0.45
Traf1P39428 Babam2-202ENSMUST00000071531 1308 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Inf2-201ENSMUST00000101029 4001 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 H2-M10.1-201ENSMUST00000025322 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Als2cr12-206ENSMUST00000191565 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Cep70-207ENSMUST00000190715 1768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Traf1P39428 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Traf1P39428 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
Traf1P39428 Dip2a-205ENSMUST00000160048 6551 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Traf1P39428 Hectd2os-203ENSMUST00000142067 2662 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Gal3st2-201ENSMUST00000094663 2844 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Tor4a-201ENSMUST00000081869 3255 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 AA474408-201ENSMUST00000098110 3339 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Mir291b-201ENSMUST00000104838 79 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Tnc-203ENSMUST00000107372 7106 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Rnft2-201ENSMUST00000117177 4381 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Gm12397-201ENSMUST00000117674 615 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Cdk1-202ENSMUST00000119827 1253 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Gm13688-201ENSMUST00000121557 608 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Psme1-208ENSMUST00000174259 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Cd9-ps-201ENSMUST00000174687 650 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Gm11942-201ENSMUST00000180255 345 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Psmb6-ps2-201ENSMUST00000187074 705 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Gm4865-201ENSMUST00000196284 1309 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Gm3527-201ENSMUST00000198905 460 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Olfr463-203ENSMUST00000217095 1977 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Gm3318-201ENSMUST00000217604 1183 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Oxsm-201ENSMUST00000022311 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 AC169511.1-201ENSMUST00000227639 995 ntBASIC12.24□□□□□ -0.45
Traf1P39428 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Rep15-201ENSMUST00000036194 1662 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Traf1P39428 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Zeb2-203ENSMUST00000076836 3913 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Traf1P39428 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Tia1-206ENSMUST00000113713 3108 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Gm10827-201ENSMUST00000181897 2586 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Traf1P39428 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Nfkbiz-202ENSMUST00000096026 4067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Nmrk2-201ENSMUST00000005069 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Ptbp3-201ENSMUST00000030076 6855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Gm15883-201ENSMUST00000153562 1690 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Cdca8-202ENSMUST00000084296 1626 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Psmc1-201ENSMUST00000021595 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Rnf216-201ENSMUST00000053498 4474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Gm12716-201ENSMUST00000120606 1354 ntBASIC12.23□□□□□ -0.45
Traf1P39428 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Eapp-202ENSMUST00000110713 886 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
Traf1P39428 Gm11670-201ENSMUST00000143435 511 ntTSL 2 BASIC12.23□□□□□ -0.45
Traf1P39428 Gm6291-201ENSMUST00000179994 309 ntBASIC12.23□□□□□ -0.45
Traf1P39428 Igkv2-116-201ENSMUST00000199327 362 ntBASIC12.23□□□□□ -0.45
Traf1P39428 Gm6518-201ENSMUST00000208450 342 ntBASIC12.23□□□□□ -0.45
Traf1P39428 AC154585.1-201ENSMUST00000218917 997 ntBASIC12.23□□□□□ -0.45
Traf1P39428 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Rps9-201ENSMUST00000006496 751 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Atp6v1e2-201ENSMUST00000065758 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Gm28581-201ENSMUST00000186086 2177 ntBASIC12.23□□□□□ -0.45
Traf1P39428 Ccdc130-202ENSMUST00000098578 2119 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Gm43143-201ENSMUST00000196083 2023 ntBASIC12.23□□□□□ -0.45
Traf1P39428 Prim2-201ENSMUST00000027312 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Atp11c-201ENSMUST00000033480 5939 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Traf1P39428 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Traf1P39428 AC160060.1-201ENSMUST00000217840 1813 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms