Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Scgb2b2-201ENSMUST00000038835 520 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm22042-201ENSMUST00000082989 165 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Mir219a-1-201ENSMUST00000083621 110 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm26110-201ENSMUST00000083971 165 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Cd300c2-201ENSMUST00000092464 1187 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Tbc1d14-203ENSMUST00000126077 4085 ntAPPRIS ALT1 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Scn2a-205ENSMUST00000200829 6348 ntAPPRIS ALT1 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Brpf1-201ENSMUST00000113117 4540 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 CT572985.1-201ENSMUST00000220599 4714 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Xrcc2-201ENSMUST00000030773 3247 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Tmem252-201ENSMUST00000057243 2462 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Upp2-201ENSMUST00000059102 2498 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Dpy19l2-201ENSMUST00000133010 3442 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Med1-203ENSMUST00000107545 8024 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Pkp1-203ENSMUST00000163260 3023 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Piwil1-202ENSMUST00000195959 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Fcrl1-202ENSMUST00000163661 1649 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Atxn1-203ENSMUST00000180110 3901 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Sfxn5-201ENSMUST00000045846 3656 ntAPPRIS P2 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Lima1-202ENSMUST00000109024 4109 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm6580-201ENSMUST00000117504 1357 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Decr1-201ENSMUST00000029877 2959 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gtpbp8-204ENSMUST00000162512 3415 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Spag9-205ENSMUST00000103168 6840 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Stox2-206ENSMUST00000210030 2734 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Mroh3-205ENSMUST00000212798 2933 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Anxa6-202ENSMUST00000108883 2489 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Paqr8-201ENSMUST00000068880 4704 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Mak-203ENSMUST00000165087 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 C130036L24Rik-202ENSMUST00000137643 3109 ntTSL 2 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Sorbs1-201ENSMUST00000099466 2223 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Tsr2-202ENSMUST00000112683 3796 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 AC166836.1-201ENSMUST00000219933 1795 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm20831-201ENSMUST00000177639 1337 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm20737-202ENSMUST00000187245 1338 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm20777-202ENSMUST00000187434 1341 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm20873-202ENSMUST00000187857 1342 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm20772-201ENSMUST00000188928 1343 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm21310-202ENSMUST00000189630 1343 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm20795-202ENSMUST00000190909 1344 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm21440-201ENSMUST00000192749 1344 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm20831-202ENSMUST00000194411 1344 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm21425-202ENSMUST00000195626 1345 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Tiam1-213ENSMUST00000163370 7255 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 9130221F21Rik-201ENSMUST00000206867 2631 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm35394-201ENSMUST00000196434 3252 ntTSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Ispd-206ENSMUST00000223068 2808 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Btrc-206ENSMUST00000224102 3037 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 AC242690.1-202ENSMUST00000214616 1742 ntTSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Mc4r-201ENSMUST00000057942 2758 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm12986-201ENSMUST00000119037 967 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm15554-201ENSMUST00000120406 913 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm25492-201ENSMUST00000157383 129 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm17376-201ENSMUST00000166016 84 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gsdmc3-203ENSMUST00000190682 2140 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Nme6-206ENSMUST00000197627 905 ntTSL 3 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm43758-201ENSMUST00000199500 367 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm17383-201ENSMUST00000078739 1041 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm21811-201ENSMUST00000096485 930 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Gpm6b-204ENSMUST00000112226 3174 ntAPPRIS ALT1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Map3k13-201ENSMUST00000042065 6709 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Zmat3-203ENSMUST00000168566 7672 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Adcy6-205ENSMUST00000228566 3707 ntAPPRIS ALT1 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Eftud2-212ENSMUST00000173679 2889 ntTSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Bmpr1b-201ENSMUST00000029948 5349 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Cipc-205ENSMUST00000187814 4098 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Cipc-201ENSMUST00000038369 4098 ntAPPRIS P2 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Olfr1324-202ENSMUST00000215270 5679 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Zbtb3-201ENSMUST00000172175 2037 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm43143-201ENSMUST00000196083 2023 ntBASIC8.61□□□□□ -1.03
Hmgb3O54879 Zfp264-202ENSMUST00000208781 2801 ntTSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Phc1-211ENSMUST00000161054 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Pbrm1-204ENSMUST00000090214 6212 ntTSL 5 BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm19557-201ENSMUST00000182109 2765 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm7932-202ENSMUST00000205047 2194 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
Hmgb3O54879 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
Retrieved 100 of 76,532 protein–RNA pairs in 94.1 ms