Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Ppargc1b-201ENSMUST00000063307 3330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
Traf1P39428 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Tmigd1-202ENSMUST00000102495 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Slc25a44-202ENSMUST00000168755 3418 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Gm38111-201ENSMUST00000194817 2741 ntBASIC12.31□□□□□ -0.44
Traf1P39428 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Krt40-202ENSMUST00000107443 1080 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Gm5148-203ENSMUST00000108105 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC12.31□□□□□ -0.44
Traf1P39428 Cryzl1-202ENSMUST00000114023 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Ncbp2-202ENSMUST00000115178 515 ntTSL 5 BASIC12.31□□□□□ -0.44
Traf1P39428 Gm6441-201ENSMUST00000120983 696 ntBASIC12.31□□□□□ -0.44
Traf1P39428 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Cryzl1-206ENSMUST00000124282 1187 ntTSL 5 BASIC12.31□□□□□ -0.44
Traf1P39428 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC12.31□□□□□ -0.44
Traf1P39428 Gm13827-201ENSMUST00000148801 372 ntBASIC12.31□□□□□ -0.44
Traf1P39428 Gm24346-201ENSMUST00000158712 194 ntBASIC12.31□□□□□ -0.44
Traf1P39428 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Traf1P39428 Gm22876-201ENSMUST00000175450 298 ntBASIC12.31□□□□□ -0.44
Traf1P39428 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Gm42732-201ENSMUST00000202887 1197 ntBASIC12.31□□□□□ -0.44
Traf1P39428 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Traf1P39428 Gm20735-202ENSMUST00000212387 519 ntTSL 2 BASIC12.31□□□□□ -0.44
Traf1P39428 AC158388.3-202ENSMUST00000225517 775 ntBASIC12.31□□□□□ -0.44
Traf1P39428 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 4930553M12Rik-201ENSMUST00000057837 498 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Traf1P39428 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Traf1P39428 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Gm29895-201ENSMUST00000209933 5652 ntTSL 5 BASIC12.31□□□□□ -0.44
Traf1P39428 Gm42521-201ENSMUST00000199190 2040 ntBASIC12.31□□□□□ -0.44
Traf1P39428 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Traf1P39428 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Gm43999-201ENSMUST00000204286 2889 ntBASIC12.31□□□□□ -0.44
Traf1P39428 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Traf1P39428 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC12.3□□□□□ -0.44
Traf1P39428 Impa1-202ENSMUST00000118410 2988 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Calu-201ENSMUST00000031779 3229 ntAPPRIS P5 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Gm13104-201ENSMUST00000119651 1446 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Ano4-202ENSMUST00000181976 1410 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Gm1661-201ENSMUST00000077500 1422 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Themis2-201ENSMUST00000045154 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Traf1P39428 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Traf1P39428 Gm23769-201ENSMUST00000104441 121 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Gm22495-201ENSMUST00000104492 126 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Gm5555-201ENSMUST00000120352 1111 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Gm15540-201ENSMUST00000136052 674 ntTSL 2 BASIC12.3□□□□□ -0.44
Traf1P39428 Gm4778-202ENSMUST00000159517 1241 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Traf1P39428 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Mid1-ps1-201ENSMUST00000167967 1248 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Gm20493-201ENSMUST00000173706 213 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Gm5808-201ENSMUST00000178090 357 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Gm28671-201ENSMUST00000187036 692 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Gm28415-201ENSMUST00000187528 452 ntTSL 2 BASIC12.3□□□□□ -0.44
Traf1P39428 Trav11n-201ENSMUST00000200113 343 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Wbp1-209ENSMUST00000205023 716 ntBASIC12.3□□□□□ -0.44
Traf1P39428 AC129217.1-201ENSMUST00000225181 642 ntBASIC12.3□□□□□ -0.44
Traf1P39428 AC154806.7-201ENSMUST00000227998 202 ntBASIC12.3□□□□□ -0.44
Traf1P39428 AC164883.7-201ENSMUST00000228534 851 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Cenpx-201ENSMUST00000026137 692 ntTSL 2 BASIC12.3□□□□□ -0.44
Traf1P39428 Cypt12-201ENSMUST00000029080 550 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Traf1P39428 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC12.3□□□□□ -0.44
Traf1P39428 2010001K21Rik-201ENSMUST00000060680 519 ntBASIC12.3□□□□□ -0.44
Traf1P39428 Ccl27a-201ENSMUST00000074387 405 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Gm7735-201ENSMUST00000089098 159 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Traf1P39428 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Traf1P39428 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Kalrn-203ENSMUST00000114947 2922 ntTSL 5 BASIC12.3□□□□□ -0.44
Traf1P39428 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC12.3□□□□□ -0.44
Traf1P39428 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Traf1P39428 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Traf1P39428 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms