Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Gm10232-201ENSMUST00000089221 720 ntBASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lima1Q9ERG0 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lima1Q9ERG0 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lima1Q9ERG0 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.62■□□□□ 0.73
Lima1Q9ERG0 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lima1Q9ERG0 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lima1Q9ERG0 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.61■□□□□ 0.73
Lima1Q9ERG0 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lima1Q9ERG0 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lima1Q9ERG0 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Lima1Q9ERG0 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lima1Q9ERG0 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lima1Q9ERG0 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Lima1Q9ERG0 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Lima1Q9ERG0 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
Lima1Q9ERG0 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Lima1Q9ERG0 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lima1Q9ERG0 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lima1Q9ERG0 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Lima1Q9ERG0 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lima1Q9ERG0 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Lima1Q9ERG0 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.58■□□□□ 0.73
Lima1Q9ERG0 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lima1Q9ERG0 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lima1Q9ERG0 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Lima1Q9ERG0 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lima1Q9ERG0 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lima1Q9ERG0 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lima1Q9ERG0 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lima1Q9ERG0 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lima1Q9ERG0 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lima1Q9ERG0 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lima1Q9ERG0 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lima1Q9ERG0 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.57■□□□□ 0.72
Lima1Q9ERG0 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lima1Q9ERG0 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lima1Q9ERG0 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Gm10399-202ENSMUST00000202768 748 ntBASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lima1Q9ERG0 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lima1Q9ERG0 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Gm5812-201ENSMUST00000061073 957 ntBASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lima1Q9ERG0 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lima1Q9ERG0 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.53■□□□□ 0.72
Lima1Q9ERG0 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms