Protein–RNA interactions for Protein: Q9DCN7

Rnft1, E3 ubiquitin-protein ligase RNFT1, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnft1Q9DCN7 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rnft1Q9DCN7 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnft1Q9DCN7 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnft1Q9DCN7 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rnft1Q9DCN7 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rnft1Q9DCN7 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
Rnft1Q9DCN7 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Rnft1Q9DCN7 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnft1Q9DCN7 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Rnft1Q9DCN7 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnft1Q9DCN7 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnft1Q9DCN7 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rnft1Q9DCN7 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.46■□□□□ 0.71
Rnft1Q9DCN7 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rnft1Q9DCN7 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rnft1Q9DCN7 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rnft1Q9DCN7 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rnft1Q9DCN7 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnft1Q9DCN7 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnft1Q9DCN7 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Rnft1Q9DCN7 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnft1Q9DCN7 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnft1Q9DCN7 Gm7143-201ENSMUST00000222811 859 ntBASIC19.44■□□□□ 0.7
Rnft1Q9DCN7 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rnft1Q9DCN7 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rnft1Q9DCN7 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rnft1Q9DCN7 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnft1Q9DCN7 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rnft1Q9DCN7 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
Rnft1Q9DCN7 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.43■□□□□ 0.7
Rnft1Q9DCN7 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnft1Q9DCN7 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnft1Q9DCN7 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnft1Q9DCN7 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnft1Q9DCN7 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.42■□□□□ 0.7
Rnft1Q9DCN7 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnft1Q9DCN7 Gm5921-201ENSMUST00000075898 882 ntBASIC19.42■□□□□ 0.7
Rnft1Q9DCN7 Cap2-205ENSMUST00000225824 1634 ntBASIC19.42■□□□□ 0.7
Rnft1Q9DCN7 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rnft1Q9DCN7 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnft1Q9DCN7 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rnft1Q9DCN7 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.4■□□□□ 0.7
Rnft1Q9DCN7 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.4■□□□□ 0.7
Rnft1Q9DCN7 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnft1Q9DCN7 Gm10232-201ENSMUST00000089221 720 ntBASIC19.4■□□□□ 0.7
Rnft1Q9DCN7 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnft1Q9DCN7 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Rnft1Q9DCN7 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Rnft1Q9DCN7 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Rnft1Q9DCN7 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Rnft1Q9DCN7 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnft1Q9DCN7 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Rnft1Q9DCN7 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Rnft1Q9DCN7 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Rnft1Q9DCN7 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Rnft1Q9DCN7 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnft1Q9DCN7 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnft1Q9DCN7 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnft1Q9DCN7 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms