Protein–RNA interactions for Protein: Q9CQ71

Rpa3, Replication protein A 14 kDa subunit, mousemouse

Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa3Q9CQ71 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rpa3Q9CQ71 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Rpa3Q9CQ71 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Gm43034-201ENSMUST00000198678 1364 ntBASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Rpa3Q9CQ71 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
Rpa3Q9CQ71 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Rpa3Q9CQ71 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21■□□□□ 0.95
Rpa3Q9CQ71 AC140930.3-201ENSMUST00000222935 274 ntBASIC21■□□□□ 0.95
Rpa3Q9CQ71 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Rpa3Q9CQ71 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rpa3Q9CQ71 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21■□□□□ 0.95
Rpa3Q9CQ71 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.99■□□□□ 0.95
Rpa3Q9CQ71 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Rpa3Q9CQ71 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Rpa3Q9CQ71 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rpa3Q9CQ71 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rpa3Q9CQ71 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Rpa3Q9CQ71 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpa3Q9CQ71 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Gm21956-201ENSMUST00000179946 522 ntBASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpa3Q9CQ71 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpa3Q9CQ71 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.95■□□□□ 0.95
Rpa3Q9CQ71 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.95■□□□□ 0.94
Rpa3Q9CQ71 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rpa3Q9CQ71 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rpa3Q9CQ71 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rpa3Q9CQ71 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms