Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Mir3960-201ENSMUST00000198213 73 ntBASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ccdc9Q8VC31 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc9Q8VC31 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc9Q8VC31 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Ccdc9Q8VC31 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc9Q8VC31 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc9Q8VC31 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc9Q8VC31 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc9Q8VC31 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc9Q8VC31 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Ccdc9Q8VC31 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ccdc9Q8VC31 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ccdc9Q8VC31 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.83■■□□□ 1.41
Ccdc9Q8VC31 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ccdc9Q8VC31 AC167019.3-201ENSMUST00000228225 1266 ntBASIC23.83■■□□□ 1.41
Ccdc9Q8VC31 Gm9812-201ENSMUST00000061934 968 ntBASIC23.83■■□□□ 1.41
Ccdc9Q8VC31 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ccdc9Q8VC31 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC23.83■■□□□ 1.4
Ccdc9Q8VC31 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc9Q8VC31 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC23.81■■□□□ 1.4
Ccdc9Q8VC31 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc9Q8VC31 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc9Q8VC31 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc9Q8VC31 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC23.81■■□□□ 1.4
Ccdc9Q8VC31 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Ccdc9Q8VC31 Gm12818-201ENSMUST00000117562 1349 ntBASIC23.81■■□□□ 1.4
Ccdc9Q8VC31 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc9Q8VC31 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc9Q8VC31 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc9Q8VC31 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC23.78■■□□□ 1.4
Ccdc9Q8VC31 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc9Q8VC31 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
Ccdc9Q8VC31 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc9Q8VC31 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc9Q8VC31 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc9Q8VC31 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc9Q8VC31 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc9Q8VC31 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc9Q8VC31 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ccdc9Q8VC31 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ccdc9Q8VC31 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ccdc9Q8VC31 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ccdc9Q8VC31 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ccdc9Q8VC31 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Ccdc9Q8VC31 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ccdc9Q8VC31 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms