Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
Ushbp1Q8R370 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ushbp1Q8R370 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ushbp1Q8R370 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
Ushbp1Q8R370 Gm2011-201ENSMUST00000203124 1263 ntBASIC22.33■■□□□ 1.17
Ushbp1Q8R370 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ushbp1Q8R370 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Gm6139-201ENSMUST00000079261 882 ntBASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ushbp1Q8R370 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Gm34220-201ENSMUST00000223001 2709 ntBASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ushbp1Q8R370 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ushbp1Q8R370 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ushbp1Q8R370 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ushbp1Q8R370 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ushbp1Q8R370 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ushbp1Q8R370 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ushbp1Q8R370 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC22.29■■□□□ 1.16
Ushbp1Q8R370 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Gm10657-201ENSMUST00000193528 1031 ntBASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Ushbp1Q8R370 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ushbp1Q8R370 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ushbp1Q8R370 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms