Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clrn1Q8K445 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clrn1Q8K445 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clrn1Q8K445 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
Clrn1Q8K445 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clrn1Q8K445 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clrn1Q8K445 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Clrn1Q8K445 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.77■□□□□ 0.6
Clrn1Q8K445 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clrn1Q8K445 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Clrn1Q8K445 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Clrn1Q8K445 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Clrn1Q8K445 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clrn1Q8K445 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clrn1Q8K445 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Clrn1Q8K445 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clrn1Q8K445 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.76■□□□□ 0.59
Clrn1Q8K445 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clrn1Q8K445 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.76■□□□□ 0.59
Clrn1Q8K445 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clrn1Q8K445 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Clrn1Q8K445 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Clrn1Q8K445 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.75■□□□□ 0.59
Clrn1Q8K445 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clrn1Q8K445 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Clrn1Q8K445 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.74■□□□□ 0.59
Clrn1Q8K445 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.74■□□□□ 0.59
Clrn1Q8K445 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.73■□□□□ 0.59
Clrn1Q8K445 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clrn1Q8K445 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clrn1Q8K445 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.71■□□□□ 0.59
Clrn1Q8K445 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Gm13241-201ENSMUST00000094493 780 ntBASIC18.7■□□□□ 0.58
Clrn1Q8K445 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn1Q8K445 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Clrn1Q8K445 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Clrn1Q8K445 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn1Q8K445 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn1Q8K445 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms