Protein–RNA interactions for Protein: Q8K2Z2

Prpf39, Pre-mRNA-processing factor 39, mousemouse

Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf39Q8K2Z2 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf39Q8K2Z2 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf39Q8K2Z2 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf39Q8K2Z2 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.69■□□□□ 0.9
Prpf39Q8K2Z2 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf39Q8K2Z2 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf39Q8K2Z2 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf39Q8K2Z2 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf39Q8K2Z2 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Gm21956-201ENSMUST00000179946 522 ntBASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Prpf39Q8K2Z2 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf39Q8K2Z2 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Prpf39Q8K2Z2 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf39Q8K2Z2 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf39Q8K2Z2 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.63■□□□□ 0.89
Prpf39Q8K2Z2 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf39Q8K2Z2 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf39Q8K2Z2 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.63■□□□□ 0.89
Prpf39Q8K2Z2 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf39Q8K2Z2 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf39Q8K2Z2 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf39Q8K2Z2 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.62■□□□□ 0.89
Prpf39Q8K2Z2 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.62■□□□□ 0.89
Prpf39Q8K2Z2 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf39Q8K2Z2 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Prpf39Q8K2Z2 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf39Q8K2Z2 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
Prpf39Q8K2Z2 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.61■□□□□ 0.89
Prpf39Q8K2Z2 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms