Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Cchcr1Q8K2I2 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Cchcr1Q8K2I2 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Cchcr1Q8K2I2 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Cchcr1Q8K2I2 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Cchcr1Q8K2I2 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Cchcr1Q8K2I2 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Cchcr1Q8K2I2 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC23.57■■□□□ 1.36
Cchcr1Q8K2I2 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Cchcr1Q8K2I2 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cchcr1Q8K2I2 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cchcr1Q8K2I2 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cchcr1Q8K2I2 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cchcr1Q8K2I2 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Etf1-202ENSMUST00000180351 108 ntBASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC23.56■■□□□ 1.36
Cchcr1Q8K2I2 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Cchcr1Q8K2I2 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Cchcr1Q8K2I2 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
Cchcr1Q8K2I2 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Cchcr1Q8K2I2 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Cchcr1Q8K2I2 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
Cchcr1Q8K2I2 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Cchcr1Q8K2I2 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC23.54■■□□□ 1.36
Cchcr1Q8K2I2 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Cchcr1Q8K2I2 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
Cchcr1Q8K2I2 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cchcr1Q8K2I2 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cchcr1Q8K2I2 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cchcr1Q8K2I2 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cchcr1Q8K2I2 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cchcr1Q8K2I2 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cchcr1Q8K2I2 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Cchcr1Q8K2I2 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cchcr1Q8K2I2 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Cchcr1Q8K2I2 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Cchcr1Q8K2I2 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
Cchcr1Q8K2I2 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC23.52■■□□□ 1.36
Cchcr1Q8K2I2 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Cchcr1Q8K2I2 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
Cchcr1Q8K2I2 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Cchcr1Q8K2I2 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
Cchcr1Q8K2I2 Iqck-206ENSMUST00000208658 2891 ntBASIC23.5■■□□□ 1.35
Cchcr1Q8K2I2 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Cchcr1Q8K2I2 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
Cchcr1Q8K2I2 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Cchcr1Q8K2I2 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Cchcr1Q8K2I2 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Cchcr1Q8K2I2 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Cchcr1Q8K2I2 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Cchcr1Q8K2I2 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Cchcr1Q8K2I2 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC23.49■■□□□ 1.35
Cchcr1Q8K2I2 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Cchcr1Q8K2I2 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Cchcr1Q8K2I2 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Cchcr1Q8K2I2 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Cchcr1Q8K2I2 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Cchcr1Q8K2I2 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Cchcr1Q8K2I2 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Cchcr1Q8K2I2 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
Cchcr1Q8K2I2 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cchcr1Q8K2I2 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Cchcr1Q8K2I2 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Cchcr1Q8K2I2 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Cchcr1Q8K2I2 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
Cchcr1Q8K2I2 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
Cchcr1Q8K2I2 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
Cchcr1Q8K2I2 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Cchcr1Q8K2I2 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Cchcr1Q8K2I2 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Cchcr1Q8K2I2 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Cchcr1Q8K2I2 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms