Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Gm10420-201ENSMUST00000121713 882 ntBASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28bQ8CEG5 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Golph3-205ENSMUST00000228671 2842 ntBASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28bQ8CEG5 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28bQ8CEG5 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Gm11175-201ENSMUST00000116172 543 ntBASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28bQ8CEG5 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Ccdc28bQ8CEG5 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28bQ8CEG5 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.58■□□□□ 0.73
Ccdc28bQ8CEG5 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28bQ8CEG5 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28bQ8CEG5 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Ccdc28bQ8CEG5 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28bQ8CEG5 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Ccdc28bQ8CEG5 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms