Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Trim56Q80VI1 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim56Q80VI1 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Trim56Q80VI1 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC23.65■■□□□ 1.38
Trim56Q80VI1 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Trim56Q80VI1 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim56Q80VI1 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim56Q80VI1 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim56Q80VI1 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim56Q80VI1 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim56Q80VI1 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim56Q80VI1 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC23.64■■□□□ 1.38
Trim56Q80VI1 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim56Q80VI1 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim56Q80VI1 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim56Q80VI1 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC23.64■■□□□ 1.37
Trim56Q80VI1 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim56Q80VI1 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim56Q80VI1 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim56Q80VI1 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim56Q80VI1 Gm15039-201ENSMUST00000118914 875 ntBASIC23.63■■□□□ 1.37
Trim56Q80VI1 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Trim56Q80VI1 Gm7160-202ENSMUST00000188519 1027 ntBASIC23.63■■□□□ 1.37
Trim56Q80VI1 Serp2-204ENSMUST00000228055 705 ntBASIC23.63■■□□□ 1.37
Trim56Q80VI1 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim56Q80VI1 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
Trim56Q80VI1 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trim56Q80VI1 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Trim56Q80VI1 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC23.62■■□□□ 1.37
Trim56Q80VI1 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC23.62■■□□□ 1.37
Trim56Q80VI1 Hsf1-207ENSMUST00000228371 2102 ntBASIC23.62■■□□□ 1.37
Trim56Q80VI1 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trim56Q80VI1 Gm43017-201ENSMUST00000198296 752 ntBASIC23.62■■□□□ 1.37
Trim56Q80VI1 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trim56Q80VI1 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
Trim56Q80VI1 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trim56Q80VI1 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC23.61■■□□□ 1.37
Trim56Q80VI1 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
Trim56Q80VI1 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trim56Q80VI1 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trim56Q80VI1 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
Trim56Q80VI1 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Trim56Q80VI1 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC23.6■■□□□ 1.37
Trim56Q80VI1 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC23.6■■□□□ 1.37
Trim56Q80VI1 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Trim56Q80VI1 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Trim56Q80VI1 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Trim56Q80VI1 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Trim56Q80VI1 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Trim56Q80VI1 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Trim56Q80VI1 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC23.58■■□□□ 1.37
Trim56Q80VI1 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Trim56Q80VI1 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC23.58■■□□□ 1.37
Trim56Q80VI1 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Gm2011-201ENSMUST00000203124 1263 ntBASIC23.57■■□□□ 1.36
Trim56Q80VI1 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC23.57■■□□□ 1.36
Trim56Q80VI1 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trim56Q80VI1 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Trim56Q80VI1 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC23.56■■□□□ 1.36
Trim56Q80VI1 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC23.56■■□□□ 1.36
Trim56Q80VI1 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Trim56Q80VI1 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Trim56Q80VI1 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC23.56■■□□□ 1.36
Trim56Q80VI1 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Trim56Q80VI1 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Trim56Q80VI1 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Trim56Q80VI1 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Trim56Q80VI1 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Trim56Q80VI1 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Trim56Q80VI1 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Trim56Q80VI1 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Trim56Q80VI1 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Trim56Q80VI1 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC23.54■■□□□ 1.36
Trim56Q80VI1 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC23.54■■□□□ 1.36
Trim56Q80VI1 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms