Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx55Q6ZPL9 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx55Q6ZPL9 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx55Q6ZPL9 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx55Q6ZPL9 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Gm12441-201ENSMUST00000121806 588 ntBASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Gm10571-201ENSMUST00000097869 1638 ntBASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx55Q6ZPL9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Ddx55Q6ZPL9 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Ddx55Q6ZPL9 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Ddx55Q6ZPL9 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC22.94■■□□□ 1.26
Ddx55Q6ZPL9 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC22.94■■□□□ 1.26
Ddx55Q6ZPL9 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC22.94■■□□□ 1.26
Ddx55Q6ZPL9 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
Ddx55Q6ZPL9 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Ddx55Q6ZPL9 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC22.93■■□□□ 1.26
Ddx55Q6ZPL9 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddx55Q6ZPL9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
Ddx55Q6ZPL9 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddx55Q6ZPL9 Nespas-201ENSMUST00000143738 1083 ntBASIC22.92■■□□□ 1.26
Ddx55Q6ZPL9 Gm42555-201ENSMUST00000199304 1039 ntBASIC22.92■■□□□ 1.26
Ddx55Q6ZPL9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddx55Q6ZPL9 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddx55Q6ZPL9 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddx55Q6ZPL9 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddx55Q6ZPL9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC22.91■■□□□ 1.26
Ddx55Q6ZPL9 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Ddx55Q6ZPL9 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC22.9■■□□□ 1.26
Ddx55Q6ZPL9 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx55Q6ZPL9 Gm10653-202ENSMUST00000139570 835 ntBASIC22.9■■□□□ 1.26
Ddx55Q6ZPL9 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx55Q6ZPL9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx55Q6ZPL9 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx55Q6ZPL9 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx55Q6ZPL9 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx55Q6ZPL9 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Ddx55Q6ZPL9 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Ddx55Q6ZPL9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Ddx55Q6ZPL9 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Ddx55Q6ZPL9 Mir5133-201ENSMUST00000174955 77 ntBASIC22.89■■□□□ 1.25
Ddx55Q6ZPL9 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Ddx55Q6ZPL9 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Ddx55Q6ZPL9 AC122428.2-201ENSMUST00000216321 1832 ntBASIC22.89■■□□□ 1.25
Ddx55Q6ZPL9 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddx55Q6ZPL9 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddx55Q6ZPL9 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddx55Q6ZPL9 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC22.88■■□□□ 1.25
Ddx55Q6ZPL9 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddx55Q6ZPL9 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddx55Q6ZPL9 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
Ddx55Q6ZPL9 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddx55Q6ZPL9 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Gm4968-201ENSMUST00000071458 858 ntBASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddx55Q6ZPL9 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC22.86■■□□□ 1.25
Ddx55Q6ZPL9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Ddx55Q6ZPL9 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
Ddx55Q6ZPL9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Ddx55Q6ZPL9 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC22.86■■□□□ 1.25
Ddx55Q6ZPL9 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ddx55Q6ZPL9 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Ddx55Q6ZPL9 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC22.85■■□□□ 1.25
Ddx55Q6ZPL9 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ddx55Q6ZPL9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ddx55Q6ZPL9 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ddx55Q6ZPL9 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ddx55Q6ZPL9 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ddx55Q6ZPL9 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Ddx55Q6ZPL9 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
Ddx55Q6ZPL9 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC22.83■■□□□ 1.25
Ddx55Q6ZPL9 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Ddx55Q6ZPL9 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Ddx55Q6ZPL9 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Ddx55Q6ZPL9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC22.82■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms