Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Smarca1Q6PGB8 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Smarca1Q6PGB8 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Smarca1Q6PGB8 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Smarca1Q6PGB8 Gm43530-201ENSMUST00000195920 274 ntBASIC22.19■■□□□ 1.14
Smarca1Q6PGB8 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC22.19■■□□□ 1.14
Smarca1Q6PGB8 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Smarca1Q6PGB8 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Smarca1Q6PGB8 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC22.18■■□□□ 1.14
Smarca1Q6PGB8 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Smarca1Q6PGB8 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Smarca1Q6PGB8 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Smarca1Q6PGB8 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Smarca1Q6PGB8 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Smarca1Q6PGB8 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Smarca1Q6PGB8 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Smarca1Q6PGB8 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Smarca1Q6PGB8 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Smarca1Q6PGB8 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Smarca1Q6PGB8 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Smarca1Q6PGB8 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Smarca1Q6PGB8 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Smarca1Q6PGB8 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Smarca1Q6PGB8 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC22.15■■□□□ 1.14
Smarca1Q6PGB8 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Smarca1Q6PGB8 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Smarca1Q6PGB8 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
Smarca1Q6PGB8 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Smarca1Q6PGB8 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
Smarca1Q6PGB8 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Smarca1Q6PGB8 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
Smarca1Q6PGB8 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Smarca1Q6PGB8 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Smarca1Q6PGB8 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Smarca1Q6PGB8 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Smarca1Q6PGB8 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC22.14■■□□□ 1.13
Smarca1Q6PGB8 AC166356.1-201ENSMUST00000228236 1426 ntBASIC22.14■■□□□ 1.13
Smarca1Q6PGB8 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Smarca1Q6PGB8 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Gm43137-201ENSMUST00000198052 594 ntBASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Smarca1Q6PGB8 Gm15043-201ENSMUST00000118843 1543 ntBASIC22.11■■□□□ 1.13
Smarca1Q6PGB8 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Smarca1Q6PGB8 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Smarca1Q6PGB8 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC22.11■■□□□ 1.13
Smarca1Q6PGB8 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Smarca1Q6PGB8 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Smarca1Q6PGB8 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC22.1■■□□□ 1.13
Smarca1Q6PGB8 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC22.1■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms